Finding from a big graph those subgraphs that satisfy certain conditions (aka. subgraph search) is useful in many applications such as community detection and subgraph matching. These problems often generate a search-space tree with size exponential to the size of the input graph. GPUs with thousands of cores are a natural choice to speed up subgraph search, but existing GPU solutions either conduct BFS on the search-space tree which leads to memory overflow due to intermediate subgraph-size explosion, or they conduct DFS on the search-space tree which is memory-efficient but can be 2 orders of magnitude slower than a BFS solution.
In this paper, we present G2-AIMD, a subgraph-centric framework for efficient subGraph Search on GPUs, which enjoys the efficiency of BFS on the search-space tree, while avoids intermediate subgraph-size explosion with novel system designs such as adaptive chunk-size adjustment and host-memory subgraph buffering, inspired by the additive-increase/multiplicative-decrease (AIMD) algorithm in TCP congestion control. G2-AIMD provides a convenient subgraph-centric programming interface to facilitate the implementation of subgraph search algorithms on top, so as to enjoy the above performance merits. G2-AIMD also supports multi-GPU execution where each GPU only needs to load a fraction of the input graph. To demonstrate the efficiency and scalability of G2-AIMD, two algorithms were implemented on top with additional optimization techniques, and they significantly outperform the existing GPU solutions.
more »
« less
Faster Depth-First Subgraph Matching on GPUs
Subgraph search problems such as maximal clique enumeration and subgraph matching generate a search-space tree which is traversed in depth-first manner by serial backtracking algorithms that are recursive. Since Jenkins et al. reported the backtracking paradigm to be sub-optimal for GPU acceleration, breadth-first traversal of the search-space tree is widely adopted by GPU algorithms. However, they produce a lot of intermediate subgraphs that exhaust the GPU device memory. Recent works revive the depth-first backtracking paradigm for GPU acceleration, where each warp is a basic processing unit with its own stack in device memory for subgraph backtracking. However, they adopt complicated methods for load balancing that incur a lot of overheads. They also use hardcoded fixed space for stacks that is determined ad-hoc and may lead to inaccuracy when the allocated space is insufficient.
In this paper, we use subgraph matching as a case study to propose novel depth-first GPU solutions to address the above problems. Our approach, called T-DFS, decomposes the compu- tation into independent tasks that process search-space subtrees, which are managed by an efficient lock-free circular task queue. Tasks are distributed to different warps for parallel processing, and a novel timeout mechanism is used to eliminate straggler tasks to ensure load balancing. We also support flexible and fine- grained dynamic memory allocation for stack spaces to avoid the stack space allocation pitfalls of existing works. Extensive experi- ments on real graphs show that T-DFS significantly outperforms existing depth-first GPU solutions for the subgraph matching application.
more »
« less
- Award ID(s):
- 2229394
- NSF-PAR ID:
- 10498838
- Publisher / Repository:
- IEEE
- Date Published:
- Journal Name:
- 40th IEEE International Conference on Data Engineering (ICDE)
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Finding from a big graph those subgraphs that satisfy certain conditions is useful in many applications such as community detection and subgraph matching. These problems have a high time complexity, but existing systems that attempt to scale them are all IO-bound in execution. We propose the first truly CPU-bound distributed framework called G-thinker for subgraph finding algorithms, which adopts a task-based computation model, and which also provides a user-friendly subgraph-centric vertex-pulling API for writing distributed subgraph finding algorithms that can be easily adapted from existing serial algorithms. To utilize all CPU cores of a cluster, G-thinker features (1) a highly concurrent vertex cache for parallel task access and (2) a lightweight task scheduling approach that ensures high task throughput. These designs well overlap communication with computation to minimize the idle time of CPU cores. To further improve load balancing on graphs where the workloads of individual tasks can be drastically different due to biased graph density distribution, we propose to prioritize the scheduling of those tasks that tend to be long running for processing and decomposition, plus a timeout mechanism for task decomposition to prevent long-running straggler tasks. The idea has been integrated into a novelty algorithm for maximum clique finding (MCF) that adopts a hybrid task decomposition strategy, which significantly improves the running time of MCF on dense and large graphs: The algorithm finds a maximum clique of size 1,109 on a large and dense WikiLinks graph dataset in 70 minutes. Extensive experiments demonstrate that G-thinker achieves orders of magnitude speedup compared even with the fastest existing subgraph-centric system, and it scales well to much larger and denser real network data. G-thinker is open-sourced at http://bit.ly/gthinker with detailed documentation.more » « less
-
more » « less
Vision Transformer (ViT) has demonstrated promising performance in various computer vision tasks, and recently attracted a lot of research attention. Many recent works have focused on proposing new architectures to improve ViT and deploying it into real-world applications. However, little effort has been made to analyze and understand ViT’s architecture design space and its implication of hardware-cost on different devices. In this work, by simply scaling ViT’s depth, width, input size, and other basic configurations, we show that a scaled vanilla ViT model without bells and whistles can achieve comparable or superior accuracy-efficiency trade-off than most of the latest ViT variants. Specifically, compared to DeiT-Tiny, our scaled model achieves a
\(\uparrow 1.9\% \) \(\uparrow 3.7\% \) can these scaling strategies be transferred across different real hardware devices ?”; and (2) “can these scaling strategies be transferred to different ViT variants and tasks ?”. For (1), our exploration, based on various devices with different resource budgets, indicates that the transferability effectiveness depends on the underlying device together with its corresponding deployment tool; for (2), we validate the effective transferability of the aforementioned scaling strategies obtained from a vanilla ViT model on top of an image classification task to the PiT model, a strong ViT variant targeting efficiency, as well as object detection and video classification tasks. In particular, when transferred to PiT, our scaling strategies lead to a boosted ImageNet top-1 accuracy of from\(74.6\% \) \(76.7\% \) \(\uparrow 2.1\% \) \(\uparrow 0.7\% \) -
Given a user-specified minimum degree threshold γ, a γ-quasi-clique is a subgraph where each vertex connects to at least γ fraction of the other vertices. Quasi-clique is a natural definition for dense structures, so finding large and hence statistically significant quasi-cliques is useful in applications such as community detection in social networks and discovering significant biomolecule structures and pathways. However, mining maximal quasi-cliques is notoriously expensive, and even a recent algorithm for mining large maximal quasi-cliques is flawed and can lead to a lot of repeated searches. This paper proposes a parallel solution for mining maximal quasi-cliques that is able to fully utilize CPU cores. Our solution utilizes divide and conquer to decompose the workloads into independent tasks for parallel mining, and we addressed the problem of (i) drastic load imbalance among different tasks and (ii) difficulty in predicting the task running time and the time growth with task subgraph size, by (a) using a timeout-based task decomposition strategy, and by (b) utilizing a priority task queue to schedule long-running tasks earlier for mining and decomposition to avoid stragglers. Unlike our conference version in PVLDB 2020 where the solution was built on a distributed graph mining framework called G-thinker, this paper targets a single-machine multi-core environment which is more accessible to an average end user. A general framework called T-thinker is developed to facilitate the programming of parallel programs for algorithms that adopt divide and conquer, including but not limited to our quasi-clique mining algorithm. Additionally, we consider the problem of directly mining large quasi-cliques from dense parts of a graph, where we identify the repeated search issue of a recent method and address it using a carefully designed concurrent trie data structure. Extensive experiments verify that our parallel solution scales well with the number of CPU cores, achieving 26.68× runtime speedup when mining a graph with 3.77M vertices and 16.5M edges with 32 mining threads. Additionally, mining large quasi-cliques from dense parts can provide an additional speedup of up to 89.46×.more » « less
-
null (Ed.)Object rearrangement is a widely-applicable and challenging task for robots. Geometric constraints must be carefully examined to avoid collisions and combinatorial issues arise as the number of objects increases. This work studies the algorithmic structure of rearranging uniform objects, where robot-object collisions do not occur but object-object collisions have to be avoided. The objective is minimizing the number of object transfers under the assumption that the robot can manipulate one object at a time. An efficiently computable decomposition of the configuration space is used to create a “region graph”, which classifies all continuous paths of equivalent collision possibilities. Based on this compact but rich representation, a complete dynamic programming primitive DFS DP performs a recursive depth first search to solve monotone problems quickly, i.e., those instances that do not require objects to be moved first to an intermediate buffer. DFS DP is extended to solve single-buffer, non-monotone instances, given a choice of an object and a buffer. This work utilizes these primitives as local planners in an informed search framework for more general, non-monotone instances. The search utilizes partial solutions from the primitives to identify the most promising choice of objects and buffers. Experiments demonstrate that the proposed solution returns near-optimal paths with higher success rate, even for challenging non-monotone instances, than other leading alternatives.more » « less
