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1. Phosphatidylinositol 3, 5‐bisphosphate regulates Ca ²⁺ transport during yeast vacuolar fusion through the Ca ²⁺ ATPase Pmc1

   https://doi.org/10.1111/tra.12736  

   Miner, Gregory E.; Sullivan, Katherine D.; Zhang, Chi; Rivera‐Kohr, David; Guo, Annie; Hurst, Logan R.; Ellis, Ez C.; Starr, Matthew L.; Jones, Brandon C.; Fratti, Rutilio A. (June 2020, Traffic)

   Abstract The transport of Ca²⁺across membranes precedes the fusion and fission of various lipid bilayers. Yeast vacuoles under hyperosmotic stress become fragmented through fission events that requires the release of Ca²⁺stores through the TRP channel Yvc1. This requires the phosphorylation of phosphatidylinositol‐3‐phosphate (PI3P) by the PI3P‐5‐kinase Fab1 to produce transient PI(3,5)P₂pools. Ca²⁺is also released during vacuole fusion upontrans‐SNARE complex assembly, however, its role remains unclear. The effect of PI(3,5)P₂on Ca²⁺flux during fusion was independent of Yvc1. Here, we show that while low levels of PI(3,5)P₂were required for Ca²⁺uptake into the vacuole, increased concentrations abolished Ca²⁺efflux. This was as shown by the addition of exogenous dioctanoyl PI(3,5)P₂or increased endogenous production of by the hyperactivefab1^T2250Amutant. In contrast, the lack of PI(3,5)P₂on vacuoles from the kinase deadfab1^EEEmutant showed delayed and decreased Ca²⁺uptake. The effects of PI(3,5)P₂were linked to the Ca²⁺pump Pmc1, as its deletion rendered vacuoles resistant to the effects of excess PI(3,5)P₂. Experiments with Verapamil inhibited Ca²⁺uptake when added at the start of the assay, while adding it after Ca²⁺had been taken up resulted in the rapid expulsion of Ca²⁺. Vacuoles lacking both Pmc1 and the H⁺/Ca²⁺exchanger Vcx1 lacked the ability to take up Ca²⁺and instead expelled it upon the addition of ATP. Together these data suggest that a balance of efflux and uptake compete during the fusion pathway and that the levels of PI(3,5)P₂can modulate which path predominates. 

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2. mRNA ADENOSINE METHYLASE promotes drought tolerance through N⁶ ‐methyladenosine‐dependent and independent impacts on mRNA regulation in Arabidopsis

   https://doi.org/10.1111/nph.20227  

   Ganguly, Diep_R; Li, Yongfang; Bhat, Susheel_Sagar; Tiwari, Shalini; Ng, Pei_Jia; Gregory, Brian_D; Sunkar, Ramanjulu (October 2024, New Phytologist)

   Summary Among many mRNA modifications, adenine methylation at the N⁶position (N⁶‐methyladenosine, m⁶A) is known to affect mRNA biology extensively. The influence of m⁶A has yet to be assessed under drought, one of the most impactful abiotic stresses.We show thatArabidopsis thaliana(L.) Heynh. (Arabidopsis) plants lacking mRNA ADENOSINE METHYLASE (MTA) are drought‐sensitive. Subsequently, we comprehensively assess the impacts of MTA‐dependent m⁶A changes during drought on mRNA abundance, stability, and translation in Arabidopsis.During drought, there is a global trend toward hypermethylation of many protein‐coding transcripts that does not occur inmta. We also observe complex regulation of m⁶A at a transcript‐specific level, possibly reflecting compensation by other m⁶A components. Importantly, a subset of transcripts that are hypermethylated in an MTA‐dependent manner exhibited reduced turnover and translation inmta, compared with wild‐type (WT) plants, during drought. Additionally, MTA impacts transcript stability and translation independently of m⁶A. We also correlate drought‐associated deposition of m⁶A with increased translation of modulators of drought response, such asRD29A,COR47,COR413,ALDH2B,ERD7, andABF4in WT, which is impaired inmta.m⁶A is dynamic during drought and, alongside MTA, promotes tolerance by regulating drought‐responsive changes in transcript turnover and translation. 

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3. An Fe( ii ) complex detects hydrogen peroxide with ¹ H and ¹⁹ F magnetic resonance imaging responses

   https://doi.org/10.1039/D5CC04066C  

   Karbalaei, Sana; Franke, Alicja; Zahl, Achim; Pokkuluri, P Raj; Beyers, Ronald J; Ivanović-Burmazović, Ivana; Goldsmith, Christian R (October 2025, Chemical Communications)

   A highly air- and water-stable Fe(ii) complex with a fluorinated ligand has a strong¹⁹F MRI signal but is a poorT₁-weighted¹H MRI contrast agent. Upon oxidation by H₂O₂, the¹⁹F MRI signal decays as the relaxivity for¹H MRI markedly improves. 

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4. mRNA N⁶ ‐methyladenosine is critical for cold tolerance in Arabidopsis

   https://doi.org/10.1111/tpj.15872  

   Govindan, Ganesan; Sharma, Bishwas; Li, Yong‐Fang; Armstrong, Christopher D.; Merum, Pandrangaiah; Rohila, Jai S.; Gregory, Brian D.; Sunkar, Ramanjulu (July 2022, The Plant Journal)

   SUMMARY Plants respond to low temperatures by altering the mRNA abundance of thousands of genes contributing to numerous physiological and metabolic processes that allow them to adapt. At the post‐transcriptional level, these cold stress‐responsive transcripts undergo alternative splicing, microRNA‐mediated regulation and alternative polyadenylation, amongst others. Recently, m⁶A, m⁵C and other mRNA modifications that can affect the regulation and stability of RNA were discovered, thus revealing another layer of post‐transcriptional regulation that plays an important role in modulating gene expression. The importance of m⁶A in plant growth and development has been appreciated, although its significance under stress conditions is still underexplored. To assess the role of m⁶A modifications during cold stress responses, methylated RNA immunoprecipitation sequencing was performed in Arabidopsis seedlings esposed to low temperature stress (4°C) for 24 h. This transcriptome‐wide m⁶A analysis revealed large‐scale shifts in this modification in response to low temperature stress. Because m⁶A is known to affect transcript stability/degradation and translation, we investigated these possibilities. Interestingly, we found that cold‐enriched m⁶A‐containing transcripts demonstrated the largest increases in transcript abundance coupled with increased ribosome occupancy under cold stress. The significance of the m⁶A epitranscriptome on plant cold tolerance was further assessed using themtamutant in which the major m⁶A methyltransferase gene was mutated. Compared to the wild‐type, along with the differences inCBFsandCORgene expression levels, themtamutant exhibited hypersensitivity to cold treatment as determined by primary root growth, biomass, and reactive oxygen species accumulation. Furthermore, and most importantly, both non‐acclimated and cold‐acclimatedmtamutant demonstrated hypersensitivity to freezing tolerance. Taken together, these findings suggest a critical role for the epitranscriptome in cold tolerance of Arabidopsis. 

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5. Leaf NPK stoichiometry, δ¹⁵N , and apparent nutrient limitation of co‐occurring carnivorous and noncarnivorous plants

   https://doi.org/10.1002/ecy.3825  

   Givnish, Thomas J.; Shiba, Zackary W. (October 2022, Ecology)

   Abstract Previous meta‐analyses suggested that carnivorous plants—despite access to N, P, and K from prey—have significantly lower leaf concentrations of these nutrients than noncarnivores. Those studies, however, largely compared carnivores in nutrient‐poor habitats with noncarnivores in more nutrient‐rich sites, so that the differences reported might reflect habitat differences as much as differences in nutrient‐capture strategy. Here we examine three carnivorous and 12 noncarnivorous plants in the same nutrient‐poor bog to compare their foliar nutrient concentrations, assess their patterns of nutrient limitation using leaf NPK stoichiometry, and estimate percentage N derived from prey by carnivores using a mixing model for stable N isotopes. We hypothesized that (1) carnivore leaf nutrient concentrations approach or exceed those of noncarnivores in the same nutrient‐poor habitat; (2) species in different functional groups show different patterns of stoichiometry and apparent nutrient limitation; and (3) noncarnivores might show evidence of using other means of nutrient acquisition or conservation to reduce nutrient limitation. At Fallison Bog in northern Wisconsin, carnivorous plants (Drosera rotundifolia,Sarracenia purpurea,Utricularia macrorhiza) showed significantly lower leaf percentage C and N:P ratio, higher δ¹⁵N, and no difference from noncarnivores in leaf N, P, K, and δ¹³C. Sedges had significantly lower leaf percentage P, percentage C, and N:K ratio, and higher K:P ratio than nonsedges restricted to theSphagnummat, and may tap peat N via aerenchyma‐facilitated peat oxidation (oxipeditrophy). Evergreen ericaceous shrubs exhibited significantly higher levels of percentage C and lower values of δ¹⁵N than mat nonericads.Calla palustris—growing in the nutrient‐rich moat at the bog's upland edge—had very high values of leaf N, K, δ¹⁵N, and N:P ratio, suggesting that it may obtain nutrients from minerotrophic flows from the adjacent uplands and/or rapidly decaying peat. Stoichiometric analyses indicated that most species are N limited. A mixing model applied to δ¹⁵N values for carnivores, noncarnivores, and insects produced an estimate of 50% of leaf N derived from prey forUtricularia, 42% forSarracenia, and 41% forDrosera. 

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