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1. Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles

   https://doi.org/10.1128/mSystems.00188-21  

   Lampe, Robert H.; Hernandez, Gustavo; Lin, Yuan Yu; Marchetti, Adrian (April 2021, mSystems)

   Huber, Julie A. (Ed.)

   ABSTRACT Wind-driven upwelling followed by relaxation results in cycles of cold nutrient-rich water fueling intense phytoplankton blooms followed by nutrient depletion, bloom decline, and sinking of cells. Surviving cells at depth can then be vertically transported back to the surface with upwelled waters to seed another bloom. As a result of these cycles, phytoplankton communities in upwelling regions are transported through a wide range of light and nutrient conditions. Diatoms appear to be well suited for these cycles, but their responses to them remain understudied. To investigate the bases for diatoms’ ecological success in upwelling environments, we employed laboratory simulations of a complete upwelling cycle with a common diatom, Chaetoceros decipiens , and coccolithophore, Emiliania huxleyi . We show that while both organisms exhibited physiological and transcriptomic plasticity, the diatom displayed a distinct response enabling it to rapidly shift-up growth rates and nitrate assimilation when returned to light and available nutrients following dark nutrient-deplete conditions. As observed in natural diatom communities, C. decipiens highly expresses before upwelling, or frontloads, key transcriptional and nitrate assimilation genes, coordinating its rapid response to upwelling conditions. Low-iron simulations showed that C. decipiens is capable of maintaining this response when iron is limiting to growth, whereas E. huxleyi is not. Differential expression between iron treatments further revealed specific genes used by each organism under low iron availability. Overall, these results highlight the responses of two dominant phytoplankton groups to upwelling cycles, providing insight into the mechanisms fueling diatom blooms during upwelling events. IMPORTANCE Coastal upwelling regions are among the most biologically productive ecosystems. During upwelling events, nutrient-rich water is delivered from depth resulting in intense phytoplankton blooms typically dominated by diatoms. Along with nutrients, phytoplankton may also be transported from depth to seed these blooms then return to depth as upwelling subsides creating a cycle with varied conditions. To investigate diatoms’ success in upwelling regions, we compare the responses of a common diatom and coccolithophore throughout simulated upwelling cycles under iron-replete and iron-limiting conditions. The diatom exhibited a distinct rapid response to upwelling irrespective of iron status, whereas the coccolithophore’s response was either delayed or suppressed depending on iron availability. Concurrently, the diatom highly expresses, or frontloads, nitrate assimilation genes prior to upwelling, potentially enabling this rapid response. These results provide insight into the molecular mechanisms underlying diatom blooms and ecological success in upwelling regions. 

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2. Oligotrophic waters of the Northwest Atlantic support taxonomically diverse diatom communities that are distinct from coastal waters

   https://doi.org/10.1111/jpy.13388  

   Setta, Samantha P; Lerch, Sarah; Jenkins, Bethany D; Dyhrman, Sonya T; Rynearson, Tatiana A (December 2023, Journal of Phycology)

   Abstract Diatoms are important components of the marine food web and one of the most species‐rich groups of phytoplankton. The diversity and composition of diatoms in eutrophic nearshore habitats have been well documented due to the outsized influence of diatoms on coastal ecosystem functioning. In contrast, patterns of both diatom diversity and community composition in offshore oligotrophic regions where diatom biomass is low have been poorly resolved. To compare the diatom diversity and community composition in oligotrophic and eutrophic waters, diatom communities were sampled along a 1,250 km transect from the oligotrophic Sargasso Sea to the coastal waters of the northeast US shelf. Diatom community composition was determined by amplifying and sequencing the 18S rDNA V4 region. Of the 301 amplicon sequence variants (ASVs) identified along the transect, the majority (70%) were sampled exclusively from oligotrophic waters of the Gulf Stream and Sargasso Sea and included the generaBacteriastrum,Haslea,Hemiaulus,Pseudo‐nitzschia, andNitzschia. Diatom ASV richness did not vary along the transect, indicating that the oligotrophic Sargasso Sea and Gulf Stream are occupied by a diverse diatom community. Although ASV richness was similar between oligotrophic and coastal waters, diatom community composition in these regions differed significantly and was correlated with temperature and phosphate, two environmental variables known to influence diatom metabolism and geographic distribution. In sum, oligotrophic waters of the western North Atlantic harbor diverse diatom assemblages that are distinct from coastal regions, and these open ocean diatoms warrant additional study, as they may play critical roles in oligotrophic ecosystems. 

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3. Potential interactions between diatoms and bacteria are shaped by trace element gradients in the Southern Ocean

   https://doi.org/10.3389/fmars.2022.876830  

   Sterling, Alexa R.; Holland, Laura Z.; Bundy, Randelle M.; Burns, Shannon M.; Buck, Kristen N.; Chappell, P. Dreux; Jenkins, Bethany D. (March 2023, Frontiers in Marine Science)

   The growth of diatoms in the Southern Ocean, especially the region surrounding the West Antarctic Peninsula, is frequently constrained by low dissolved iron and other trace metal concentrations. This challenge may be overcome by mutualisms between diatoms and co-occurring associated bacteria, in which diatoms produce organic carbon as a substrate for bacterial growth, and bacteria produce siderophores, metal-binding ligands that can supply diatoms with metals upon uptake as well as other useful secondary compounds for diatom growth like vitamins. To examine the relationships between diatoms and bacteria in the plankton (diatom) size class (> 3 µm), we sampled both bacterial and diatom community composition with accompanying environmental metadata across a naturally occurring concentration gradient of macronutrients, trace metals and siderophores at 21 stations near the West Antarctic Peninsula (WAP). Offshore Drake Passage stations had low dissolved iron (0.33 ± 0.15 nM), while the stations closer to the continental margin had higher dissolved iron (5.05 ± 1.83 nM). A similar geographic pattern was observed for macronutrients and most other trace metals measured, but there was not a clear inshore-offshore gradient in siderophore concentrations. The diatom and bacteria assemblages, determined using 18S and 16S rDNA sequencing respectively, were similar by location sampled, and variance in both assemblages was driven in part by concentrations of soluble reactive phosphorous, dissolved manganese, and dissolved copper, which were all higher near the continent. Some of the most common diatom sequence types observed were Thalassiosira and Fragilariopsis , and bacteria in the plankton size fraction were most commonly Bacteroidetes and Gammaproteobacteria. Network analysis showed positive associations between diatoms and bacteria, indicating possible in situ mutualisms through strategies such as siderophore and vitamin biosynthesis and exchange. This work furthers the understanding of how naturally occurring gradients of metals and nutrients influence diatom-bacteria interactions. Our data suggest that distinct groups of diatoms and associated bacteria are interacting under different trace metal regimes in the WAP, and that diatoms with different bacterial partners may have different modes of biologically supplied trace metals. 

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4. Plankton assemblages across a coastal to oceanic gradient of Northern Australia and responses to a storm perturbation in the Argo Basin

   https://doi.org/10.1016/j.dsr2.2026.105613  

   Davies, Claire H; Eriksen, Ruth S; Jayasinghe, Sahan; McEnnulty, Felicity; Landry, Michael R (April 2026, Deep Sea Research Part II: Topical Studies in Oceanography)

   Plankton sampling was undertaken across the 5000 m deep Argo Abyssal Plain (hereafter Argo Basin), the only known spawning region for Southern Bluefin Tuna (SBT). The Continuous Plankton Recorder was towed from Darwin across the Northern Australian shelf to the Argo Basin and bottle and net samples collected during experimental studies in the southern Argo Basin. Larger diatoms (>15 μm) were the main phytoplankton group that distinguished Coastal shelf from Slope and Argo Basin provinces, with higher diatom and total cell abundances, higher diatom diversity and a higher ratio of diatoms to dinoflagellates in Coastal waters. We confirm the descriptions of the phytoplankton provinces defined from historical data and show that zooplankton distributions follow a similar pattern in terms of abundance but not diversity. The shelf-slope province boundary also occurred further east than in historical records. Whilst this region of the Indian Ocean is characterised by low productivity compared to other Eastern Boundary Current regions, tropical storms during the SBT spawning season are shown to be important for stimulating productivity and increasing abundances of zooplankton prey for tuna larvae. Results of this study solidify prior knowledge from this poorly studied area and highlight the need to better understand the ephemeral dynamics of plankton communities of this region. 

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5. Modeling Upper Ocean Ecosystem Dynamics in Response to Interannual Sea‐Ice Variability in the Western Antarctic Peninsula

   https://doi.org/10.1029/2025JG009428  

   Czajka, Catherine R; Turner, Jessica S; Stammerjohn, Sharon; Kim, Heather H; Schofield, Oscar; Saenz, Benjamin T; Doney, Scott C (April 2026, Journal of Geophysical Research: Biogeosciences)

   In the Western Antarctic Peninsula (WAP), marine plankton dynamics are tightly linked to the interannual variability in environmental conditions, including phenological shifts in sea‐ice seasonality. To explore these linkages, we use a 1‐dimensional vertical ocean‐ice‐ecosystem model (KPP‐Eco‐Ice, or KEI) that simulates physical and ecosystem conditions at a continental shelf mooring location in the Palmer Long Term Ecological Research program sampling grid. KEI allows for year‐round examination of the ecosystem in a region where in situ observations on the shelf are limited to January. Comparisons are made between seasonal sea‐ice retreat, mixed layer depth, primary productivity, and phytoplankton relative abundance, grazing, and loss rates. KEI successfully captures seasonal patterns in the WAP, demonstrating that total seasonal primary production was highest following a winter with late sea‐ice retreat. Stability in the surface mixed layer enables high photosynthetic rates by alleviating light limitation, while wind‐induced surface mixing results in lower phytoplankton production and biomass in years with early sea‐ice retreat. However, mixing reduces iron limitation in surface waters, which may influence phytoplankton species composition. Small, non‐diatom phytoplankton are better‐adapted to high light and low iron conditions, thriving longer in a year with late sea‐ice retreat and higher seasonal primary production, while larger diatoms are more abundant in the years with early sea‐ice retreat and lower seasonal production. These findings have implications for grazer populations and subsequent carbon export from the surface to depth in the WAP region. This study validates the role that sea ice plays in shaping Antarctic ecosystem dynamics. 

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