Abstract BackgroundRoot and soil microbial communities constitute the below-ground plant microbiome, are drivers of nutrient cycling, and affect plant productivity. However, our understanding of their spatiotemporal patterns is confounded by exogenous factors that covary spatially, such as changes in host plant species, climate, and edaphic factors. These spatiotemporal patterns likely differ across microbiome domains (bacteria and fungi) and niches (root vs. soil). ResultsTo capture spatial patterns at a regional scale, we sampled the below-ground microbiome of switchgrass monocultures of five sites spanning > 3 degrees of latitude within the Great Lakes region. To capture temporal patterns, we sampled the below-ground microbiome across the growing season within a single site. We compared the strength of spatiotemporal factors to nitrogen addition determining the major drivers in our perennial cropping system. All microbial communities were most strongly structured by sampling site, though collection date also had strong effects; in contrast, nitrogen addition had little to no effect on communities. Though all microbial communities were found to have significant spatiotemporal patterns, sampling site and collection date better explained bacterial than fungal community structure, which appeared more defined by stochastic processes. Root communities, especially bacterial, were more temporally structured than soil communities which were more spatially structured, both across and within sampling sites. Finally, we characterized a core set of taxa in the switchgrass microbiome that persists across space and time. These core taxa represented < 6% of total species richness but > 27% of relative abundance, with potential nitrogen fixing bacteria and fungal mutualists dominating the root community and saprotrophs dominating the soil community. ConclusionsOur results highlight the dynamic variability of plant microbiome composition and assembly across space and time, even within a single variety of a plant species. Root and soil fungal community compositions appeared spatiotemporally paired, while root and soil bacterial communities showed a temporal lag in compositional similarity suggesting active recruitment of soil bacteria into the root niche throughout the growing season. A better understanding of the drivers of these differential responses to space and time may improve our ability to predict microbial community structure and function under novel conditions.
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Geographic and temporal distance–decay relationships across taxa
Communities that are farther away from one another in distance or time tend to be more dissimilar. These relationships are often referred to as ‘distance–decay' relationships, relating compositional dissimilarity of communities to geographic distance or exploring compositional shifts through time at a single site. The data required to explore both relationships simultaneously – and their potential interactions – require standardized sampling through time across a set of geographically unique sites. We used data on five taxonomic groups sampled between 2013 and 2021 as part of the National Ecological Observatory Network (NEON) to explore evidence for geographic and temporal distance–decay relationships. Links between these relationships were explored by estimating the temporal consistency of geographic distance–decay relationships and estimating the strength of geographic patterns in temporal distance–decay relationships. Overall, we found evidence for geographic and temporal distance–decay relationships across the five studied taxa, but detected no temporal signal in geographic distance–decay relationships and no spatial signal in temporal distance–decay relationships. Together, this highlights that community composition changes across geographic and temporal gradients, but that the drivers of these changes may depend on different drivers at different scales.
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- Award ID(s):
- 2213878
- PAR ID:
- 10533378
- Publisher / Repository:
- Wiley Online Library
- Date Published:
- Journal Name:
- Oikos
- Volume:
- 2024
- Issue:
- 4
- ISSN:
- 0030-1299
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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