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1. Rapid development and digitization of the Recent mollusk collection at the Florida Museum of Natural History, University of Florida, Gainesville

   Slapcinsky, John; Bemis, Amanda; Portell, Roger; Auffenberg, Kurt; Paulay, Gustav (October 2025, The Nautilus)

   The Florida Museum of Natural History (FLMNH) currently houses nearly 580,000 specimen-lots of close to 3 million specimens of recent mollusks. It is one of the largest collections of its type in North America and, except for new donations, its collection data is entirely accessible online. The collection has grown rapidly since its founding in the early 20th century, especially in the past 50 years. While global in scope, the collection is especially strong in material from North and South America, the Caribbean, Madagascar, Pacific Ocean islands, and south Asia. Holdings have been greatly enriched by biodiversity surveys conducted by museum staff and research associates and by acquisition of relinquished institutional and private collections. Field collections often have linked voucher specimens, tissues, sequence data, and digital images. The FLMNH mollusk collection is an important resource for systematics, biogeography, biodiversity studies, and education. 

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2. Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)

   https://doi.org/10.3897/zookeys.1134.96103  

   Braker, Emily M. (December 2022, ZooKeys)

   Fluid-preserved reptile and amphibian specimens are challenging to photograph with traditional methods due to their complex three-dimensional forms and reflective surfaces when removed from solution. An effective approach to counteract these issues involves combining focus stack photography with the use of a photo immersion tank. Imaging specimens beneath a layer of preservative fluid eliminates glare and risk of specimen desiccation, while focus stacking produces sharp detail through merging multiple photographs taken at successive focal steps to create a composite image with an extended depth of field. This paper describes the wet imaging components and focus stack photography workflow developed while conducting a large-scale digitization project for targeted reptile and amphibian specimens housed in the University of Colorado Museum of Natural History Herpetology Collection. This methodology can be implemented in other collections settings and adapted for use with fluid-preserved specimen types across the Tree of Life to generate high-quality, taxonomically informative images for use in documenting biodiversity, remote examination of fine traits, inclusion in publications, and educational applications. 

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3. Putting U.S. collections on the map: collaborative digitization and innovation

   Bieler, Rüdiger; Bogan, Arthur E; Criales, Maria M; Dietl, Gregory P; Duda_Jr, Tom F; Fuchs, Corinne E; Giribet, G; Goodheart, Jessica A; Leal, José H; Lee, Taehwan; et al (October 2025, The Nautilus)

   Leal, JH; Bieler, R (Ed.)

   Among biocollections, mollusks are a particularly powerful resource for a wide range of studies, including biogeography, conservation, ecology, environmental monitoring, evolutionary biology, and systematics. U.S. mollusk collections are housed in stand-alone natural history museums, at universities, and in a variety of governmental and non-governmental institutions. Differing in their histories, specializations, and uses, they share common needs for long-term development, and collectively contribute to biodiversity knowledge at regional, national, and global scales. Commitment by dedicated staff, collectors, and volunteers, institutional investments, philanthropy, and governmental funding have built and maintained these collections and their support infrastructure. Efforts by the North American malacological collection community since the early 1970s led to coordination in database design but left the data isolated in individual institutions. Collection digitization developed through a combination of individual/institutional initiatives and federally supported projects funded by the National Science Foundation (NSF) and the Institute of Museum and Library Services (IMLS). Advances in digital technology enabled the shift toward nationally and globally unified collections. Networking and collaboration were greatly accelerated by NSF’s Advancing Digitization of Biodiversity Collections (ADBC) program, which created a central coordinating organization (iDigBio) and funded Thematic Collections Network (TCN) projects. One such TCN was developed to mobilize nearly 90% of the known U.S. museum-collections-based data of the U.S. Atlantic and Gulf coasts (Mobilizing Millions of Marine Mollusks of the Eastern Seaboard—ESB). The project, involving 16 museum collections (plus the Smithsonian Institution as federal partner), combines data from approximately 4.5 million specimens collected from the ESB region and makes them available to the TCN portal InvertEBase and other aggregators such as iDigBio and GBIF. In addition to fostering community and expanding the corpus of available digitized mollusk records through new data entry and georeferencing (GEOLocate, CoGe) and standardizing taxonomy, the project drove key innovations for the invertebrate collections community. For instance, it worked with the Biodiversity Information Standards (TDWG) group to create a new Darwin Core standard term, “Vitality”, expanded GEOLocate to support complex geospatial types, integrated global elevation and bathymetric datasets directly into georeferencing workflow, and developed various education and outreach public outreach products. Synthesizing from the 15 following articles with individual histories of ESB-participating mollusk collections, several topics are discussed—such as what defines a “good” mollusk collection in the digital age and the importance of federal support for this national resource. 

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4. Putting U.S. mollusk collections on the map: collaborative digitization and innovation

   Bieler, R; Bogan, A; Criales, M; Dietl, G; Duda, T; Fuchs, C; Giribet, G; Goodheart, J; Leal, J; Lee, T; et al (October 2025, The Nautilus)

   Among biocollections, mollusks are a particularly powerful resource for a wide range of studies, including biogeography, conservation, ecology, environmental monitoring, evolutionary biology, and systematics. U.S. mollusk collections are housed in stand-alone natural history museums, at universities, and in a variety of governmental and non-governmental institutions. Differing in their histories, specializations, and uses, they share common needs for long-term development, and collectively contribute to biodiversity knowledge at regional, national, and global scales. Commitment by dedicated staff, collectors, and volunteers, institutional investments, philanthropy, and governmental funding have built and maintained these collections and their support infrastructure. Efforts by the North American malacological collection community since the early 1970s led to coordination in database design but left the data isolated in individual institutions. Collection digitization developed through a combination of individual/institutional initiatives and federally supported projects funded by the National Science Foundation (NSF) and the Institute of Museum and Library Services (IMLS). Advances in digital technology enabled the shift toward nationally and globally unified collections. Networking and collaboration were greatly accelerated by NSF’s Advancing Digitization of Biodiversity Collections (ADBC) program, which created a central coordinating organization (iDigBio) and funded Thematic Collections Network (TCN) projects. One such TCN was developed to mobilize nearly 90% of the known U.S. museum-collections-based data of the U.S. Atlantic and Gulf coasts (Mobilizing Millions of Marine Mollusks of the Eastern Seaboard—ESB). The project, involving 16 museum collections (plus the Smithsonian Institution as federal partner), combines data from approximately 4.5 million specimens collected from the ESB region and makes them available to the TCN portal InvertEBase and other aggregators such as iDigBio and GBIF. In addition to fostering community and expanding the corpus of available digitized mollusk records through new data entry and georeferencing (GEOLocate, CoGe) and standardizing taxonomy, the project drove key innovations for the invertebrate collections community. For instance, it worked with the Biodiversity Information Standards (TDWG) group to create a new Darwin Core standard term, “Vitality”, expanded GEOLocate to support complex geospatial types, integrated global elevation and bathymetric datasets directly into georeferencing workflow, and developed various education and outreach public outreach products. Synthesizing from the 15 following articles with individual histories of ESB-participating mollusk collections, several topics are discussed—such as what defines a “good” mollusk collection in the digital age and the importance of federal support for this national resource. 

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5. Collections Management and High-Throughput Digitization using Distributed Cyberinfrastructure Resources

   https://doi.org/10.3897/biss.2.25643  

   Motz, Gary; Zimmerman, Alexander; Cook, Kimberly; Bancroft, Alyssa (July 2018, Biodiversity Information Science and Standards)

   Collections digitization relies increasingly upon computational and data management resources that occasionally exceed the capacity of natural history collections and their managers and curators. Digitization of many tens of thousands of micropaleontological specimen slides, as evidenced by the effort presented here by the Indiana University Paleontology Collection, has been a concerted effort in adherence to the recommended practices of multifaceted aspects of collections management for both physical and digital collections resources. This presentation highlights the contributions of distributed cyberinfrastructure from the National Science Foundation-supported Extreme Science and Engineering Discovery Environment (XSEDE) for web-hosting of collections management system resources and distributed processing of millions of digital images and metadata records of specimens from our collections. The Indiana University Center for Biological Research Collections is currently hosting its instance of the Specify collections management system (CMS) on a virtual server hosted on Jetstream, the cloud service for on-demand computational resources as provisioned by XSEDE. This web-service allows the CMS to be flexibly hosted on the cloud with additional services that can be provisioned on an as-needed basis for generating and integrating digitized collections objects in both web-friendly and digital preservation contexts. On-demand computing resources can be used for the manipulation of digital images for automated file I/O, scripted renaming of files for adherence to file naming conventions, derivative generation, and backup to our local tape archive for digital disaster preparedness and long-term storage. Here, we will present our strategies for facilitating reproducible workflows for general collections digitization of the IUPC nomenclatorial types and figured specimens in addition to the gigapixel resolution photographs of our large collection of microfossils using our GIGAmacro system (e.g., this slide of conodonts). We aim to demonstrate the flexibility and nimbleness of cloud computing resources for replicating this, and other, workflows to enhance the findability, accessibility, interoperability, and reproducibility of the data and metadata contained within our collections. 

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