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			<titleStmt><title level='a'>Biodiversity in changing environments: An external‐driver internal‐topology framework to guide intervention</title></titleStmt>
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				<publisher>Ecological Society of America</publisher>
				<date>08/01/2024</date>
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				<bibl> 
					<idno type="par_id">10546290</idno>
					<idno type="doi">10.1002/ecy.4322</idno>
					<title level='j'>Ecology</title>
<idno>0012-9658</idno>
<biblScope unit="volume">105</biblScope>
<biblScope unit="issue">8</biblScope>					

					<author>Katharine N Suding</author><author>Courtney G Collins</author><author>Lauren M Hallett</author><author>Loralee Larios</author><author>Laurel M Brigham</author><author>Joan Dudney</author><author>Emily C Farrer</author><author>Julie E Larson</author><author>Nancy Shackelford</author><author>Marko J Spasojevic</author>
				</bibl>
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			<abstract><ab><![CDATA[<title>Abstract</title> <p>Accompanying the climate crisis is the more enigmatic biodiversity crisis. Rapid reorganization of biodiversity due to global environmental change has defied prediction and tested the basic tenets of conservation and restoration. Conceptual and practical innovation is needed to support decision making in the face of these unprecedented shifts. Critical questions include: How can we generalize biodiversity change at the community level? When are systems able to reorganize and maintain integrity, and when does abiotic change result in collapse or restructuring? How does this understanding provide a template to guide when and how to intervene in conservation and restoration? To this end, we frame changes in community organization as the modulation of external abiotic drivers on the internal topology of species interactions, using plant–plant interactions in terrestrial communities as a starting point. We then explore how this framing can help translate available data on species abundance and trait distributions to corresponding decisions in management. Given the expectation that community response and reorganization are highly complex, the external‐driver internal‐topology (EDIT) framework offers a way to capture general patterns of biodiversity that can help guide resilience and adaptation in changing environments.</p>]]></ab></abstract>
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<div xmlns="http://www.tei-c.org/ns/1.0"><head>INTRODUCTION</head><p>Accelerating global change, including both directional changes (e.g., warming) and increased variation or extremes (e.g., droughts and deluges), is receiving well-justified attention from scientists and policy makers <ref type="bibr">(Collins et al., 2014;</ref><ref type="bibr">Field et al., 2014)</ref>. Although great effort is focused on managing the climate crisis <ref type="bibr">(Steffen et al., 2018)</ref>, we face a biodiversity crisis that is equally profound <ref type="bibr">(D&#237;az et al., 2019)</ref>. Biodiversity is declining faster today than it has at any previous point in human history <ref type="bibr">(Ceballos et al., 2020)</ref>, with current extinction rates far outpacing speciation <ref type="bibr">(De Vos et al., 2015)</ref>. By 2050, climate-induced habitat alteration is predicted to result in the extinction of a third of the species on this planet <ref type="bibr">(Roman-Palacios &amp; Wiens, 2020)</ref>. Despite strong evidence of nature's benefits to people <ref type="bibr">(Pecl et al., 2017)</ref> and a deep moral imperative <ref type="bibr">(Callicott, 2013)</ref>, we have not made comparable progress advancing models of biodiversity change, particularly at scales relevant for local management action <ref type="bibr">(D&#237;az et al., 2019)</ref>.</p><p>Against the backdrop of globally elevated extinction rates <ref type="bibr">(Ceballos et al., 2020;</ref><ref type="bibr">Pecl et al., 2017)</ref>, local biodiversity change (within a terrestrial nature reserve or marine protected area, for instance, where we expect most species to have the potential to interact with one another) is often idiosyncratic: Some areas are losing species, other areas are gaining species, and still others are surprisingly resilient <ref type="bibr">(Chase et al., 2019;</ref><ref type="bibr">McGill et al., 2015;</ref><ref type="bibr">Srivastava et al., 2021)</ref>. One of the few generalities is species turnover and shifts in abundance <ref type="bibr">(Blowes et al., 2019;</ref><ref type="bibr">Dornelas et al., 2014;</ref><ref type="bibr">Vellend et al., 2017)</ref>, reorganizing communities through time.</p><p>The multitude of ways ecological communities reorganize exposes the limits of our ability to predict biodiversity response and plan interventions to guide that change <ref type="bibr">(Hobbs et al., 2017;</ref><ref type="bibr">Lynch et al., 2021;</ref><ref type="bibr">Srivastava et al., 2021)</ref>. Species turnover within protected area boundaries defies the strong spatial roots of conservation <ref type="bibr">(Nicholson et al., 2021)</ref>, traditionally well versed in maintaining diversity within a defined place <ref type="bibr">(Bergstrom et al., 2021;</ref><ref type="bibr">Pimm et al., 2018)</ref>. Further, community reorganization in response to environments with no prior analog defies the temporal roots of ecological restoration, built on foundational concepts of recovery, succession, and assembly back to a prior state <ref type="bibr">(Palmer et al., 2014;</ref><ref type="bibr">Suding, 2011)</ref>. As suitable habitats shift, baselines change, and reference states blur, we need information to guide decisions about possible interventions and thier effect on trajectories of community reorganization <ref type="bibr">(Hobbs et al., 2011;</ref><ref type="bibr">Prober et al., 2019;</ref><ref type="bibr">Shackelford et al., 2022;</ref><ref type="bibr">Suding et al., 2015)</ref>.</p><p>Generalizing local biodiversity response to global environmental change is an incredible challenge, yet it can be informed by several rich bodies of work. First, understanding relationships between the environment and species composition, both temporally and spatially, has been a theme in ecology since its inception (e.g., <ref type="bibr">Clements, 1916;</ref><ref type="bibr">Gleason, 1926)</ref>. A second body of work, often intersecting with the first, has considered how species interactions structure communities and maintain diversity <ref type="bibr">(Leibold, 1995;</ref><ref type="bibr">MacArthur &amp; Levins, 1967;</ref><ref type="bibr">Tilman, 1994)</ref>. Functional traits have emerged as a complementary third approach to better understand the mechanisms by which species respond to the environment and each other <ref type="bibr">(Adler et al., 2012;</ref><ref type="bibr">HilleRisLambers et al., 2012;</ref><ref type="bibr">Usinowicz &amp; Levine, 2018)</ref>. A key challenge is to account for both the direct effects of the environment and the indirect effects of the environment moderated by interactions among species <ref type="bibr">(Gilman et al., 2010;</ref><ref type="bibr">Suding et al., 2008;</ref><ref type="bibr">Tylianakis et al., 2008;</ref><ref type="bibr">Tylianakis &amp; Morris, 2017)</ref>.</p><p>Research across all three bodies of work supports the expectation that global environmental change will almost invariably drive changes in the organization of biodiversity within a community, including the number (through gains and loss) of species, their identity (through compositional turnover), and their abundances (becoming more abundant or rare), as well as how species interact together (who is interacting with whom, type of interactions, per-capita interaction strengths). This expectation shifts the key question in biodiversity change from whether a community will reorganize to how that reorganization will play out through time <ref type="bibr">(Avolio et al., 2020;</ref><ref type="bibr">Langley et al., 2018)</ref>. Simple biodiversity metrics (e.g., richness) often provide little insight into the important shifts that emerge <ref type="bibr">(Godsoe et al., 2023)</ref>, as reorganization has many flavors: It can be compositional turnover and reshuffling of species abundances that adaptively track global change or it can be wholesale transformations with cascading species loss <ref type="bibr">(Hillebrand et al., 2018)</ref>. Intervention to redirect this reorganization, when it is desired, needs to target these different pathways.</p><p>Here we develop a generalizable, four-step framework that captures community reorganization in a way that supports the management of local-scale biodiversity dynamics. First, we propose two primary axes influencing biodiversity response-external drivers and internal topologies (the structure of species interaction networks)-and suggest a systematic way to generalize this variation. We then identify research approaches (e.g., data collection and analyses) that can build an understanding of community reorganization across these axes to support strategic management interventions. Third, we illustrate this approach in different ecosystems that vary in their external drivers and their internal topologies. Lastly, we provide a pathway for application to management, emphasizing the ties between different elements in the framework and interventions. We end with some key uncertainties and paths forward from here. In this initial conceptualization, we focus on interactions within a single trophic level (e.g., plants interacting with plants) and define a community according to this within-guild framing. It will critical to expand this initial framing to other taxa (e.g., beyond plants) and other interactions (e.g., food web, plant-pollinator). We also acknowledge the many advances at eco-evolutionary and ecosystem interfaces, as well as at regional scales related to species movements and range shifts, that are very applicable but beyond the scope of this paper.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>A TEMPLATE FOR LOCAL BIODIVERSITY CHANGE</head><p>While we have made great progress in understanding patterns of local biodiversity change (e.g., <ref type="bibr">McGill et al., 2015)</ref>, the lack of a general template to understand how environmental change is reorganizing a community can lead protected-area managers to make decisions more focused on avoiding any further reorganization than on guiding a system toward a particular trajectory <ref type="bibr">(Cook et al., 2013;</ref><ref type="bibr">Yates et al., 2018)</ref>. Our experience suggests that key to identify important mechanisms is to consider how external drivers modulate internal topologies-which we call the external-driver, internal-topology (EDIT) framework.</p><p>The EDIT framework is aimed at contextualizing shifts in biodiversity as a community reorganizes in response to global environmental change (Figure <ref type="figure">1</ref>). First, communities often exhibit distinct responses to different external drivers (e.g., higher temperature vs. variation in rainfall) because the abiotic conditions created by the drivers lead to specific functional responses <ref type="bibr">(Avolio et al., 2021)</ref>. While these external drivers are typically "slow variables" that change independently of internal dynamics <ref type="bibr">(Scheffer, 2009)</ref>, they modulate community organization via the internal network structure of interacting organisms, which we call topologies (after <ref type="bibr">K&#233;fi, 2020;</ref><ref type="bibr">Petchey et al., 2009, among many others)</ref>. We draw from network ecology here, noting that most usage of topologies has been largely in consumptive (food web) or nontrophic multilayer (plant-pollinator) networks focused on who interacts with whom; we widen this usage with consideration of the direction and strength of interactions important in competitive networks (e.g., <ref type="bibr">Soliveres et al., 2015)</ref>. As topologies are repeatable nonrandom configurations of structure, they provide generalization of the interactions that characterize a particular community and how external drivers may shift that structure <ref type="bibr">(Cadotte et al., 2013;</ref><ref type="bibr">Lasky et al., 2014;</ref><ref type="bibr">Letten et al., 2017;</ref><ref type="bibr">Pascual &amp; Dunne, 2006)</ref>.</p><p>The EDIT framework borrows concepts from complexity science (e.g., <ref type="bibr">Meadows, 2008)</ref> and stands on the shoulders of ecological giants: <ref type="bibr">Lindeman (1942)</ref> used a similar representation for ecosystem trophic dynamics (also <ref type="bibr">Sterner, 2012)</ref>, <ref type="bibr">Paine (1966) in food webs, and</ref><ref type="bibr">MacArthur (1972)</ref> and <ref type="bibr">May (1974)</ref> in their theoretical constructs. A defining characteristic of the EDIT framework is that it aims to support local managers who are navigating the complexity of the biodiversity and global change crises by creating a generalizable template that can apply to a diversity of ecosystems. By using accessible data sources-from long-term patterns of abundance in monitoring, to results of experimental manipulations and management trials, to functional trait characterizations of species compositionmultiple forms of inference can capture community reorganization <ref type="bibr">(Adler et al., 2013;</ref><ref type="bibr">Case &amp; Bender 1981;</ref><ref type="bibr">Funk et al., 2017;</ref><ref type="bibr">Ives et al., 2003;</ref><ref type="bibr">Suding et al., 2008;</ref><ref type="bibr">Wootton, 1993)</ref>. Here, we highlight three types of external drivers and four internal network structures that we expect to be common in terrestrial plant communities (Figure <ref type="figure">1</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>External drivers</head><p>Climate change and associated changes in atmospheric deposition and disturbance regimes impact ecosystems by shifting both mean conditions and environmental variability <ref type="bibr">(Dickinson et al., 2014;</ref><ref type="bibr">Smith et al., 2009)</ref>. Although a large body of work emphasizes the importance of external drivers on community dynamics, it is often difficult to link local-scale climate factors with the reorganization of a community over time <ref type="bibr">(Antao et al., 2020;</ref><ref type="bibr">Vellend et al., 2017)</ref>. These difficulties often stem from climate variables affecting species through a variety of pathways and environmental drivers varying in importance across systems <ref type="bibr">(Avolio et al., 2020;</ref><ref type="bibr">Felton et al., 2021;</ref><ref type="bibr">Harrison, 2020)</ref>. One way to generalize across external drivers is to frame them in the context of major controls on species fitness (selection after <ref type="bibr">Vellend [2017]</ref>):</p><p>(1) those that shift the availability of limiting resources, (2) those that increase stress via changes in nonresources, and (3) those that increase the variability in resource availability or stress conditions (Figure <ref type="figure">1a</ref>, Table <ref type="table">1a</ref>). In what follows, we briefly discuss expectations for the direct effects of external drivers for each of these three types of drivers (we consider indirect effects through Type Demographic response a Functional response Local management interventions b To direct To resist (a) External drivers Resource Increase population growth (assuming resource is limiting) Benefit resource acquisitive species, disadvantage resource conservative species Add resources (e.g., fertilize) Decrease available resources via biomass-removing disturbances (grazing, fire) or microbial immobilization (via C additions for N) Abiotic stress Decrease population growth Benefit stress-tolerant/ avoidant species Restrict nonresource amelioration (e.g., temperature management, shading) that would alleviate stress Prioritize enhancement of foundation/nurse species or physical structures (e.g., zeedyk structures), alleviate stressors Environmental variability Decrease population growth Benefit species with bet-hedging and/or plastic traits Limit regulation of environmental fluctuations (e.g., flow regimes) or resource inputs (e.g., irrigation) Develop adaptive management plans to reduce exacerbating factors in times of extremes (e.g., adjusting grazing pressure) (b) Internal network topology Dominance Skew of per-capita interaction strengths, with a few strong negative interactions, deterministic hierarchy, or higher-order interactions Increase representation of high resource optimal traits; decrease or loss of species with traits far from resource acquisitive optimum Act to increase fitness of dominant plant through interventions that target other species Introduce selective disturbance agents that target dominant species and/or desirable species with high niche overlap and trait optima with dominant Facilitative Skew of per-capita interaction strengths, with a few species (nurse plants) exerting strong positive effects on beneficiary species Increase representation of traits that benefit from nurse facilitation (less stress tolerant); nurse plant traits include abiotic tolerance, aboveground stature, and traits that affect abiotic or biogeochemical conditions Promote nurse plant recruitment and persistence up to moderate densities, introduce desirable species that could otherwise not persist without nurse plant Remove nurse plants Negative frequency Self-limiting negative frequency dependence (advantage when rare); strong negative conspecific interaction strengths Broaden trait representation related to niche partitioning; loss of species with high trait/niche overlap Remove undesirable species with high niche overlap, introduce species dissimilar to residents with low overlap Limit abundance fluctuations, homogenize environmental variation and fluctuation Positive feedback Self-reinforcing positive frequency dependence, advantage when abundant; priority effects; strong positive conspecific interaction strengths Trait overdispersion (bimodal distribution) at larger scales due to local priority effects; advantage of traits related to positive cross-trophic feedbacks (plant-soil, plant-pollinator) Protect areas from biomass-removing disturbance to maintain desirable feedbacks Reduce biomass and legacy effects alongside new species introduction to shift priority effects Note: These should be treated as hypotheses, consistent with theory but in need of testing in experimental settings and in practical application. See text for definitions and more explanation for each driver and topology. a For external drivers, expectations of direct effects of increasing intensity (e.g., increased resource availability) with the opposing patterns valid for decreasing levels of external drivers. For topologies, expectations of intensification or shift to topology (e.g., toward increased dominance control). b We describe these in the context of resist-accept-direct (RAD) framework for decision making, after Lynch et al. (2021), where a third option for each is to accept (do nothing). ECOLOGY 5 of 26 19399170, 2024, 8, Downloaded from <ref type="url">https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4322</ref> by University Of Colorado Librari, Wiley Online Library on [02/10/2024]. See the Terms and Conditions (<ref type="url">https://onlinelibrary.wiley.com/terms-and-conditions</ref>) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License</p><p>internal dynamics in the following sections), acknowledging the large amount of prior work on these core ecological concepts, the sometimes fuzzy expectations related to the separation of direct and indirect effects, and the many potential avenues of expansion.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Resource availability</head><p>Many aspects of environmental change can be viewed as changes in resource availability (green icon in Figure <ref type="figure">1a</ref>): Notable for terrestrial plants are rainfall in water-limited, atmospheric nitrogen (N) deposition in N-limited and eutrophication in phosphorus-limited systems. Resource limitation is classically defined by a change in a resource that leads to an increase in production. Changes in multiple resources can also occur simultaneously, thereby colimiting plant production <ref type="bibr">(Bloom et al., 1985;</ref><ref type="bibr">Farrior et al., 2013;</ref><ref type="bibr">Seastedt &amp; Knapp, 1993)</ref>. When solely considering the direct effects of external drivers, an increase in the availability of limiting resources should increase population growth rates and abundances of all species, albeit to different extents (e.g., <ref type="bibr">D&#305;az et al., 2003;</ref><ref type="bibr">Ives &amp; Cardinale, 2004)</ref>. Plants with traits related to rapid resource consumption and growth, described as a resource acquisitive syndrome, are thought to benefit most from the direct effects of increased resource availability, whereas a resource conservative syndrome of traits is thought to characterize plants able to persist as resource availability declines <ref type="bibr">(Goldberg, 1990;</ref><ref type="bibr">Tilman, 1982)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Abiotic stress</head><p>Environmental change can increase plant stress through physiological pathways that are not driven by depletable resources (e.g., yellow icon in Figure <ref type="figure">1a</ref>). One clear way to define plant stress was made by <ref type="bibr">Grime (1979)</ref>, who argued that stress limits the ability of plants to convert energy into biomass. For instance, low or high temperature, anoxic conditions, high salinity, heavy metals, and ultraviolet light have often been considered abiotic stressors for plants <ref type="bibr">(Chapin et al., 1993)</ref>. As opposed to increased population growth rates in response to increased resources, stress is expected to directly decrease population growth rates. Species will be less impacted by stress if they can tolerate (e.g., via resource conservative traits protecting plants from tissue damage), avoid (e.g., via altered physiology or growth), or escape (e.g., via early or late phenology) increasing levels of stress <ref type="bibr">(Ives &amp; Cardinale, 2004;</ref><ref type="bibr">Wardle &amp; Peltzer, 2003)</ref>.</p><p>The distinction between abiotic stress and resource limitation is imperfect: Low water resource conditions (e.g., drought) are also commonly considered a stress that affects photosynthetic capacity, and some stressors (e.g., temperature) can affect resources, such as nitrogen availability, through microbial processes.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Environmental variability</head><p>We propose a third type of external driver related to a shift in the historic range of variability experienced by a system (blue icon in Figure <ref type="figure">1a</ref>; <ref type="bibr">Sala et al., 2015;</ref><ref type="bibr">Vazquez et al., 2017)</ref>. Extreme events, such as increased rainfall and temperature variability, can affect the proportion and timing of suitable growing conditions for a given species and can cause the community reorganization responses to lag behind the shift in environmental conditions <ref type="bibr">(Lawson et al., 2015)</ref>. Population growth is often expected to decrease in cases of increased environmental variability (see <ref type="bibr">Drake [2005]</ref> and <ref type="bibr">Rudgers et al. [2018]</ref> for more detailed treatment). Increased demographic stochasticity can accelerate this decline by elevating the chance a population reaches a low-abundance threshold with high extinction risk <ref type="bibr">(Gravel et al., 2011)</ref>. Species with bet-hedging and highly plastic traits are thought to better tolerate increased variability, depending on whether variability is predictable or stochastic, often at the cost of lowered arithmetic mean fitness <ref type="bibr">(Botero et al., 2015;</ref><ref type="bibr">Simons, 2011)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Summary</head><p>Parsing the complexity of external forcing associated with global change into three types of external drivers is a clear simplification. Yet, this generalization facilitates the connection of emerging climate exposure and sensitivity studies (e.g., <ref type="bibr">Dickinson et al., 2014)</ref> to decades of theory and knowledge development around core concepts of resource availability, abiotic stress, and increased temporal variability <ref type="bibr">(Flores-Moreno et al., 2019;</ref><ref type="bibr">Gravel et al., 2011;</ref><ref type="bibr">Hart &amp; Marshall, 2013)</ref>. This lens enables broad inference into the type of species (and their traits) that are likely to respond directly to a given type of external driver.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Internal network topologies</head><p>Species interactions are dynamic, varying across species, space, and time via the structure of interactions that compose an ecological network (Figure <ref type="figure">1b</ref>; <ref type="bibr">Gilman et al., 2010;</ref><ref type="bibr">Losapio et al., 2019;</ref><ref type="bibr">Pellissier et al., 2018;</ref><ref type="bibr">Tylianakis &amp; Morris, 2017;</ref><ref type="bibr">Zoller et al., 2023)</ref>. Networks can be represented with nodes as species (or other component groupings based on, e.g., traits or abundance) connected by links that represent interactions (and the strength of these interactions) between nodes. Networks assemble in nonrandom sets of topologies, possibly resulting from selection against unstable configurations or emerging from properties of interacting species <ref type="bibr">(K&#233;fi et al., 2015;</ref><ref type="bibr">May, 1974;</ref><ref type="bibr">Paine, 1980)</ref>. A network topology can provide insight into important pathways that characterize community reorganization, for instance, whether a given structure is maintained or when a shift occurs to a contrasting network structure <ref type="bibr">(Pascual &amp; Dunne, 2006;</ref><ref type="bibr">Ponisio et al., 2019)</ref>.</p><p>The translation of complex internal dynamics to network topologies enables the identification of structures that inform common mechanisms of (and management solutions for) community reorganization <ref type="bibr">(Bascompte, 2010;</ref><ref type="bibr">Bhatia et al., 2023;</ref><ref type="bibr">Cenci et al., 2018;</ref><ref type="bibr">Delmas et al., 2019;</ref><ref type="bibr">Dormann et al., 2017)</ref>. Here we develop a set of topologies that describe interaction structures common in terrestrial plant communities that also translate to theories of species' interactions, for example, differences in average fitness and frequency dependence after <ref type="bibr">Chesson (2000)</ref>, <ref type="bibr">Grainger, Letten, et al. (2019a)</ref>, <ref type="bibr">Letten et al. (2017)</ref>, and many others. We propose four general types of network topologies: dominance control, facilitative control, negative frequency control, and positive feedback control (Figure <ref type="figure">1b</ref>, Table <ref type="table">1b</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Dominance control</head><p>A competitive hierarchy orders species by their ability to obtain limiting resources and, in doing so, negatively affect the fitness of other species (Figure <ref type="figure">1b</ref>: purple symbol; <ref type="bibr">Matias et al., 2018;</ref><ref type="bibr">Wainwright et al., 2019)</ref>. Optimal traits related to competitive ability confer high relative fitness <ref type="bibr">(Hardin, 1960)</ref> and increased dominance in competitive hierarchies (Figure <ref type="figure">1c</ref>; <ref type="bibr">Kraft et al., 2015;</ref><ref type="bibr">Perez-Ramos et al., 2019)</ref>. Species with suboptimal traits are more likely to be excluded. This type of topology often has a skewed distribution of interaction strengths, with a few abundant species having strong competitive effects, in terms of per-capita interaction strengths, total interaction strengths (abundance &#215; pre-capita interaction strengths), or often (we suspect) both. Interactions among other species are weak and potentially intransitive without a consistent ordering <ref type="bibr">(Paine, 1992;</ref><ref type="bibr">Preston et al., 2019)</ref>. Dominance could also arise through higher-order interactions such as negative interactions between less abundant species that benefit a third species. We call this network topology dominance control (Table <ref type="table">1b</ref>, purple icon in Figure <ref type="figure">1b</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Facilitative control</head><p>Positive interactions have been increasingly recognized as critical components in interaction network structure <ref type="bibr">(Bruno et al., 2003;</ref><ref type="bibr">Bulleri et al., 2016)</ref>. Nurse plants are often considered foundation species that enable the persistence of other species through mechanisms such as soil moisture retention, soil nutrient modification, abiotic stress amelioration, seed trapping, pollinator visitation, and herbivore protection <ref type="bibr">(Brooker et al., 2008;</ref><ref type="bibr">Filazzola &amp; Lortie, 2014;</ref><ref type="bibr">Gomez-Aparicio, 2009)</ref>. These positive interactions can expand species niches through increasing average fitness. Like dominance control, the direct effects of external drivers are often assumed to lead to nurse plant abundance, while the interactions with the nurse plant determine persistence of the other species <ref type="bibr">(Brigham &amp; Suding, 2023)</ref>. Traits that allow for the persistence of nurse plants are expected to differ from the traits that allow for the persistence of the beneficiary species, resulting in high trait dispersion and clustering <ref type="bibr">(Schob et al., 2012)</ref>. This type of topology also should have a skewed distribution of interaction strengths, with a set of species (e.g., nurse plants) positively affecting the growth rate of beneficiary species. Interactions among beneficiaries may often be weaker and more negative. We call this topology facilitative control (Table <ref type="table">1b</ref>; gray icon in Figure <ref type="figure">1b</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Negative frequency control</head><p>Self-limitation or negative frequency dependence occurs when differences in species resource use cause intraspecific interactions to be more intense than interspecific interactions. As a result, when any one species increases in abundance, it interacts more with conspecifics, and its per-capita growth rate slows (Figure <ref type="figure">1b</ref>: brown symbol; <ref type="bibr">Dostal et al., 2018;</ref><ref type="bibr">Grainger, Levine, &amp; Gilbert, 2019b;</ref><ref type="bibr">Hallett et al., 2018)</ref>. When interactions are largely structured by negative frequency dependence, species have high growth rates when rare and slowed population growth when abundant, fostering the persistence of multiple species (stabilizing mechanism after <ref type="bibr">Chesson, 2000)</ref>. Networks structured by negative frequency control are thought to have high functional diversity and low niche overlap (Figure <ref type="figure">1b</ref>; <ref type="bibr">HilleRisLambers et al., 2012;</ref><ref type="bibr">Kraft et al., 2015)</ref>. As similar negative frequency dependence can occur due to interactions with other trophic positions as well, such as through the role of host-specific enemies <ref type="bibr">(Bever, 1994;</ref><ref type="bibr">Johnson et al., 2017)</ref>. Networks with this structure have strong negative conspecific associations, with weaker interactions across heterospecific associations (and possibly more intransitivity; <ref type="bibr">Yang &amp; Hui, 2020)</ref>. We term this type of topology negative frequency control (Table <ref type="table">1b</ref>, Figure <ref type="figure">1b</ref> in brown).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Positive feedback control</head><p>Positive frequency dependence occurs when a species has an advantage as it becomes more abundant. Mechanisms include self-reinforcing effects on soil communities, resource cycling, or trophic interactions (Figure <ref type="figure">1b</ref>, teal symbol; <ref type="bibr">Suding &amp; Hobbs, 2009)</ref>. Positive feedbacks can accelerate compositional change and cause community divergence into alternative states <ref type="bibr">(Bachelot et al., 2020;</ref><ref type="bibr">Chung et al., 2019;</ref><ref type="bibr">Larios et al., 2017)</ref>. With positive feedback control, species arriving first have an establishment advantage (priority effect) and the ability to modify environments (Figure <ref type="figure">1b</ref>: teal symbol; white boxes) in a way that favors their continued performance over others <ref type="bibr">(Song et al., 2020;</ref><ref type="bibr">Yelenik &amp; D'Antonio, 2013)</ref>. Subsequent community divergence results in patchiness and overdispersed bimodal distributions of traits at larger scales (Figure <ref type="figure">1c</ref> bottom row, arrows pointing toward divergent trait optima; <ref type="bibr">Fukami et al., 2005)</ref>. Networks with this structure have positive effects among conspecifics, particularly for species exhibiting self-reinforcing effects. Weaker interactions are expected to occur among heterospecifics, with potentially diverging positive or negative effects from the modifying species. We call this topology positive feedback control (Table <ref type="table">1b</ref>, teal icon in Figure <ref type="figure">1b</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Summary</head><p>The influence of internal dynamics is widely viewed as a key reason for the difficulty in predicting local diversity change <ref type="bibr">(Chen et al., 2019;</ref><ref type="bibr">McGill et al., 2015)</ref>. The four types of interaction topologies detailed above-dominance, facilitation, negative frequency, and positive feedback-are common expectations for contrasting structures that can enable generalization of internal dynamics. These four topologies also array along gradients related to niche and fitness differences (similar to <ref type="bibr">Spaak et al., 2021)</ref>, with dominance to facilitation along a fitness axis (where traits affect per-capita growth rate regardless of species frequency) and positive to negative frequency control along a niche axis (where frequency and the similarity of traits relative to others affect per-capita growth). Networks with a weak or random structure of interactions that do not fit in these bins could be considered either additional topologies (e.g., neutrality or strong abiotic control) or transient states due to slow dynamics or disequilibrial lags <ref type="bibr">(CaraDonna et al., 2021;</ref><ref type="bibr">Williams et al., 2021)</ref>. More work on the assembly and disassembly of topologies will better illuminate these dynamics over time <ref type="bibr">(Bascompte &amp; Stouffer, 2009)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>External drivers modulating internal topologies (EDIT)</head><p>While network structure has often been treated as a static system characteristic, accumulating evidence indicates that external drivers can indeed change the structure of species interactions (Table <ref type="table">2</ref>; <ref type="bibr">Poisot et al., 2015;</ref><ref type="bibr">Valiente-Banuet et al., 2015)</ref>. For instance, a community that is resilient to changes in external drivers might often persist in its current topology following disturbance, with moderate changes in interaction strength among species. In contrast, when external drivers shift the community into a different topology (e.g., from negative frequency to dominance control), it may often lead to community transformations with more abrupt shifts in composition, richness, and the distribution of functional traits (e.g., <ref type="bibr">Cenci et al., 2018;</ref><ref type="bibr">Landi et al., 2018)</ref>.</p><p>Expectations for terrestrial plant communities suggest common pathways by which external drivers can mediate internal dynamics to shift topologies (Table <ref type="table">2</ref>, Figure <ref type="figure">1b</ref> internal arrows). Increasing resource availability (e.g., nitrogen deposition) is expected to directly benefit species that rapidly acquire resources and grow fast and shift topologies toward dominance control <ref type="bibr">(Matias et al., 2018;</ref><ref type="bibr">Olsen et al., 2016;</ref><ref type="bibr">Wainwright et al., 2019)</ref>. Increasing stress is predicted to harm tolerant species the least and shift topologies toward facilitative control (i.e., the stress gradient hypothesis; le <ref type="bibr">Roux &amp; McGeoch, 2010;</ref><ref type="bibr">Maestre et al., 2009)</ref>. Increasing environmental variation can directly benefit bet hedging and plastic species, while shifting topologies toward negative frequency control with increased importance of niche differences <ref type="bibr">(Adler &amp; Drake, 2008;</ref><ref type="bibr">de Mazancourt et al., 2013)</ref>; it may also shift organization from dominance to facilitative control during stressful times such as droughts <ref type="bibr">(Ploughe et al., 2018)</ref>. Positive feedback topologies are often expected at intermediate resource or stress conditions and then lead to threshold behavior as resource availability or stress conditions intensify <ref type="bibr">(Dudney et al., 2018;</ref><ref type="bibr">Larios et al., 2017)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Summary</head><p>External drivers are expected to moderate internal dynamics, potentially shifting one topology toward another (gray arrows in Figure <ref type="figure">1b</ref>). We expect that shifts in topology might often constitute more substantial community reorganization and indicate a loss of resilience. We note here that these more substantial shifts could align with conservation or restoration goals or they might be considered catastrophic collapses. Approaches to infer network structure through species associations or functional trait proxies, which we detail in the next section, could help identify decision-making points.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>APPROACHES TO INFER DRIVERS AND TOPOLOGIES</head><p>One value of a general heuristic framework is that it can be used with differing levels of knowledge and information, allowing multiple types of users and application in diverse systems. Research approaches vary in generality and certainty, allowing flexibility in how the framework can be applied. We detail three main ways of collecting and applying data in this framework to understand community reorganization over time and point to efficacious management interventions.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Experimental manipulations of external drivers and internal interactions</head><p>Understanding internal interaction structure in communities has long relied on experimental approaches, such as pairwise comparisons or species removals <ref type="bibr">(Allesina &amp; Tang, 2012;</ref><ref type="bibr">Grilli et al., 2017;</ref><ref type="bibr">Levine et al., 2017)</ref>. While these approaches may be infeasible in conservation or restoration settings, they provide precise, causal estimates</p><p>T A B L E 2 External drivers modulate internal dynamics in several ways depending on potential for external drivers to shift internal network topologies. Modulation Indicators of shift Local management to either direct or resist shift a To direct shift To resist shift Resource driver shifts other topologies to dominance control Enhanced resources foster dominance and increased niche overlap; trait overdispersion shifts to trait under dispersion centered at trait optima Selective disturbance or removal targeting resource acquisitive species, in combination with resource reduction measures, or the addition of fluctuating environmental conditions (e.g., through varied disturbances) Ensure representation of species with trait optima (resource acquisitive), aid resource retention; consider opportunities to diversify along other axes (e.g., phenological, bet hedging) Stress driver shifts other topologies to facilitative control Persistence of species in proximity of nurse plants, divergence of functional diversity into nurse and beneficiary clusters Plant nurse plants at intermediate densities Remove nurse plants and augment/add species that can persist without need for positive interactions Variability driver shifts other topologies to negative frequency control Fluctuating conditions diversifies niche space, fostering negative frequency dependence and reducing niche overlap while increasing functional dissimilarity Establish diverse communities with low niche overlap, initially monitor and aid persistence of dissimilar and rare species in their "bad" times (e.g., by restoring storage mechanisms [seed or bud banks]) Maintain desired trait optimum (e.g., resource acquisitive and productive species) by selecting or supporting species that also exhibit high trait adaptability (e.g., high plasticity); reduce variability through resource additions in "bad" times (fertilizer, irrigation) Stress and resource drivers shift positive feedback control to other topologies Both increased abiotic stress and increased resource availability reduce priority effects and increase trait determinism; positive feedback control operates in intermediate stress/ resource conditions Target species for removal that have strong positive feedbacks, address legacy effects in soils or trophic communities to disrupt feedbacks, aid in vegetation shift consistent with resource or stress driver Avoid patch-removing disturbances that reset priority effects</p><p>Note: Here we list several expectations of how particular external drivers may shift topologies. A shift may or may not be desirable, depending on management goals. Communities can also reorganize (e.g., in composition or abundance rankings) and maintain a particular topology.</p><p>a</p><p>We describe directing and resisting these shifts following resist-accept-direct (RAD) framework for decision making <ref type="bibr">(Lynch et al., 2021)</ref>, where a third option for each is to accept the shift.</p><p>of species interactions. For instance, pairwise interaction trials (without varying the frequency of one species relative to another, e.g., 0:1, 1:1, 1:0) are used to estimate per-capita competitive hierarchies and facilitative effects. Varying the frequency of pairwise species interactions (e.g., 1:9, 5:5, 9:1) allows for direct tests of some types of structure (negative frequency control, positive feedback control). "Invasion when rare" is a complementary approach often used to identify frequency dependence (e.g., when an individual performs better when invading communities/patches dominated by conspecifics rather than heterospecifics, or vice versa).</p><p>Each of these approaches can be extended to address how external drivers modulate internal topologies. We have used "invasion when rare" approaches, for instance, to determine feedbacks and alternative states in California grasslands along a gradient of nitrogen availability <ref type="bibr">(Larios et al., 2017)</ref> and density/frequency gradients combined with rainfall manipulations to determine mechanisms of coexistence on California rangelands <ref type="bibr">(Hallett et al., 2019)</ref>. While these approaches are time-intensive and often allow for only a subset of species and environmental conditions to be considered, they are a direct way to estimate the structure of interaction networks and how external drivers can change that structure to lead to biodiversity change <ref type="bibr">(Maynard et al., 2020;</ref><ref type="bibr">Perez-Ramos et al., 2019;</ref><ref type="bibr">Wainwright et al., 2019)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Inference with long-term observational data</head><p>Various approaches to inferring drivers and internal topologies from observational multispecies data sets exist, including population demographic <ref type="bibr">(Farrer et al., 2014;</ref><ref type="bibr">Tredennick et al., 2017)</ref>, multivariate autoregressive <ref type="bibr">(Ives et al., 2003;</ref><ref type="bibr">Hampton et al., 2013)</ref>, S-map <ref type="bibr">(Sugihara et al., 2012)</ref>, multivariate joint species distribution <ref type="bibr">(Ovaskainen et al., 2017)</ref>, and other related models <ref type="bibr">(Clark et al., 2020;</ref><ref type="bibr">Weiss-Lehman et al., 2022)</ref>. While the specifics of these methods vary, they share the general approach of partitioning the spatiotemporal variation in community data sets to components that relate to the effects of environmental characteristics, species interactions, and random processes. They approximate species interactions as pairwise associations within a sampling unit (e.g., a negative per-capita association would be indicated if one species increased while another one decreased, after variation due to environmental effects was taken into account). These pairwise associations can be compiled into a matrix describing the associations of each species with every other, with the diagonal indicating intraspecific effects. Topologies can be broadly inferred from these matrices; for instance, self-limitation would be indicated by strong negative strengths in diagonal elements, and skewed distributions would be indicated by a few strong and many weak associations across the matrix. Comparisons at different points in time and across space (e.g., reference and managed sites) allow inference of community dynamics and management effects.</p><p>There are many reasons why correlative studies describing drivers and interactions from observational data should be interpreted cautiously, including the underlying challenge that correlations can fail to capture causal drivers and will miss higher-order interactions <ref type="bibr">(Blanchet et al., 2020;</ref><ref type="bibr">Godwin et al., 2020)</ref>. While there are constraints in interpretation, these rapidly developing methods allow a bridge between theory and a common type of data set within the management community: repeated monitoring of local community composition. We have used observational data, combined with demographic modeling approaches, to infer the mechanism of frequency control in serpentine grasslands, for instance <ref type="bibr">(Hallett et al., 2019)</ref>, and a hybrid approach where we manipulated external drivers experimentally and inferred internal interactions with hierarchical modeling in alpine habitats <ref type="bibr">(Collins et al., 2022)</ref>. We provide more details of these examples in the following section.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Inference with functional traits</head><p>Functional trait frameworks are a burgeoning research area in ecology, and there is potential to expand their use as a diagnostic of the type of external driver and topology associations with reorganization dynamics <ref type="bibr">(Cadotte et al., 2013;</ref><ref type="bibr">Dwyer &amp; Laughlin, 2017;</ref><ref type="bibr">Zirbel &amp; Brudvig, 2020)</ref>. Monitoring shifts in functional traits at the community level (e.g., community-weighted means) can help identify the influence of key external drivers (e.g., increasing representation of stress tolerant or resource acquisitive traits might point to the predominance of a stress or resource driver, respectively). Comparing changes in functional trait distributions can help identify internal topologies (e.g., converging to a trait optimum would be consistent with dominance control, while the increasing breadth of trait values would suggest negative frequency control; Figure <ref type="figure">1c</ref>) <ref type="bibr">(de Bello et al., 2021;</ref><ref type="bibr">Flores-Moreno et al., 2019;</ref><ref type="bibr">Guimaraes, 2020)</ref>.</p><p>Utilizing functional trait information, while promising, also warrants careful consideration. One important and challenging step is to identify traits with measurable fitness consequences related to external drivers and internal topologies in a system <ref type="bibr">(Larson et al., 2015;</ref><ref type="bibr">Laughlin &amp; Laughlin, 2013)</ref>. While there has been a lot of work exploring traits related to resource availability as an external driver, traits related to abiotic stress (e.g., tolerance and avoidance traits) and environmental variability (e.g., plasticity bet-hedging traits) have been less studied. In addition, traits at the seed and seedling stage rather than adult life history may be especially relevant in response to variability and stress drivers <ref type="bibr">(Larson et al., 2023)</ref>. Like traits related to external drivers, the predominance of assessing functional traits consistent with one type of topology may overlook the possibly of other types of internal dynamics. In particular, traits that reveal mechanisms of positive frequency dependence in feedback control or that are associated with positive interactions in facilitative control are understudied. As these gaps are filled, functional trait information offers a strong complementary approach, alongside abundance-based species information, to understanding external drivers and internal topologies contributing to biodiversity change.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Summary</head><p>Several methods enable inference of external driver and internal topologies in a community, including experimentation, long-term monitoring data, and statistical modeling, complemented by functional trait information. Inference from these approaches can be bolstered by intuition and place-based experiential knowledge of managers, local stewards, and indigenous peoples. Together, these multiple forms of inference can develop a template for identifying external drivers and internal topologies important to community reorganization as well as point to which types of interventions, if any, may be effective in guiding dynamics along desired trajectories.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>APPLYING THE EDIT FRAMEWORK: COMBINING EXTERNAL DRIVERS AND INTERNAL TOPOLOGIES TO UNDERSTAND LOCAL BIODIVERSITY CHANGE</head><p>Characterizing how internal topologies mediate responses to external drivers can be done using several approaches; all will allow insight into how a community reorganizes in response to global change. Here, we provide three case studies from our work in different terrestrial plant communities, with different approaches, to demonstrate the value of inferring the external driver and changes in the internal topology of interactions in order to better understand and manage community reorganization under global change.</p><p>Dominance control in alpine tundra with increased resources (nitrogen, water) in contrast to increased stress (warming)</p><p>Observations at Niwot Ridge (Colorado Rocky Mountains, USA) over the last several decades indicate a substantial warming trend, high interannual variability in precipitation (the majority of which falls as snow), and a history of atmospheric N deposition <ref type="bibr">(Crawford et al., 2020)</ref>. We assessed how three species groups in moist meadow alpine tundra (the most abundant species, a bunchgrass Deschampsia caespitosa; the three next abundant species, subdominants; and the next four most abundant species, moderates) respond to experimental manipulations of warming, nitrogen, and snow over 16 years <ref type="bibr">(Farrer et al., 2015;</ref><ref type="bibr">Collins et al., 2022</ref>; Figure <ref type="figure">2</ref>). We used a dynamic competition model (gjamTime; <ref type="bibr">Clark et al., 2020)</ref> to infer the direct effects of environmental drivers and shifts in internal interactions on community organization across these global change scenarios.</p><p>Under ambient conditions, the tundra plant community was relatively stable, with little change in abundances over time (Figure <ref type="figure">2a</ref>). Each group experienced strong intraspecific relative to interspecific competition, consistent with a negative frequency topology under ambient conditions (Figure <ref type="figure">2d</ref>).</p><p>Manipulation of an abiotic external driver (warming) shifted a negative frequency topology in ambient conditions toward a competitive reshuffling and dominance control (Figure <ref type="figure">2e</ref>). While warming exerted only weak direct effects across all species groups, Deschampsia experienced increased competition from other species groups under warmed conditions, driven by negative effects of those species on N. As the magnitude of interspecific competitive effects approached that of intraspecific effects, the reshuffling of the competitive hierarchy resulted in increased abundance of several subdominant forb species (Figure <ref type="figure">2b</ref>) that are emerging as better competitors for limited N under these warmer conditions.</p><p>When warming was accompanied by increased snow and nitrogen, external changes also shifted the negative frequency topology in ambient conditions to dominance control, yet in this case they enhanced the success of the most abundant species, Deschampia, and caused declines in the other species groups (Figure <ref type="figure">2c</ref>). Consistent with its increase over time in this treatment, Deschampsia positively responded to the external changes, and specifically to increased N availability. We did not detect any direct environmental effects on the other species groups, suggesting their declines were due to internal dynamics. Competitive effects for these other species groups were primarily driven by increased interspecific competition with each other, while Deschampsia experienced a reduction in interspecific competitive effects (Figure <ref type="figure">2f</ref>). This example also highlights the importance of changes in total interaction strengths (abundance &#215; per-capita effects) that can result from direct positive responses to external drivers such as resource availability.</p><p>Viewing how trait distributions shift under these global change scenarios also illuminate the direct effects of external drivers and changes in internal topologies. Under ambient conditions, a wide distribution of functional traits characterizes the moist meadow alpine tundra <ref type="bibr">(Spasojevic et al., 2013;</ref><ref type="bibr">Spasojevic &amp; Suding, 2012)</ref>, with Deschampsia having traits (high leaf dry matter content, tall stature, low specific leaf area [SLA]) characteristic of abundant alpine grasses globally (Figure <ref type="figure">2g</ref>-i shows the distribution of one trait, leaf dry matter content, as an example). The suite of traits exemplified by Deschampsia is thought to lead to high biomass accumulation through lateral spread <ref type="bibr">(Stanisci et al., 2020)</ref> and enhanced drought tolerance and freezing resistance <ref type="bibr">(Pescador et al., 2016)</ref>, particularly when associated with adequate levels of soil N. Warming shifted the trait distribution toward avoidant strategies such as early phenology and lower leaf dry matter content (Figure <ref type="figure">2h</ref>), supporting the reordering of the competitive hierarchy found by <ref type="bibr">Collins et al. (2022)</ref>. In contrast, with warming, snow, and N, the trait distribution narrowed toward the trait optima of Deschampsia, with reduced abundance of species that have opposing suites of traits, consistent with the intensification of dominance control (Figure <ref type="figure">2i</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Negative frequency control in serpentine grassland experiencing climate (rainfall) variability</head><p>The serpentine grassland of the Bay Area (CA, USA) supports a diverse set of annual plant species <ref type="bibr">(Hallett et al., 2014;</ref><ref type="bibr">Hobbs et al., 2007) (Figure 3a,b)</ref>. This system is characterized by highly variable precipitation, which is forecasted to become more variable over time. <ref type="bibr">Hallett et al. (2018)</ref>, by modeling population dynamics across the six most abundant species, demonstrated that this community was structured by a negative frequency topology. Intraspecific interactions were strong for all species, causing population growth rates to decline as abundance increased. In comparison, interspecific interactions were weaker than intraspecific interactions (Figure <ref type="figure">3c</ref>,<ref type="figure">d</ref>).</p><p>The abiotic driver in this case, temporal variation in rainfall, created favorable and unfavorable conditions for species differently across time. Species with high intrinsic growth rates experienced stronger negative frequency dependence and, consistent with <ref type="bibr">Adler et al. (2012)</ref>, were less sensitive to the external driver of rainfall variability. This trade-off shifted the network of species interactions in wet and dry years, as some species were more sensitive to rainfall when rare, while others were more sensitive when they were abundant (Figure <ref type="figure">3c</ref>,<ref type="figure">d</ref>). While species abundances shift with rainfall, functional diversity in such traits as specific leaf area (SLA) were maintained <ref type="bibr">(Fernandez-Going et al., 2012)</ref>.</p><p>Over the last several decades, increased resources through atmospheric N deposition have impacted serpentine grasslands <ref type="bibr">(Eskelinen &amp; Harrison, 2014;</ref><ref type="bibr">Gilbert et al., 2020;</ref><ref type="bibr">Grainger, Levine, &amp; Gilbert, 2019b;</ref><ref type="bibr">Weiss, 1999)</ref>. As N levels increased later in the time series, an exotic grass, Bromus hordeaceus, that was historically moderately abundant and fluctuated with rainfall conditions at low N conditions (Figure <ref type="figure">3e</ref>,f, orange), was able to increase in abundance in both dry and wet years. Interactions with the historically most abundant species, Plantago erecta, indicate strong competitive interactions and a shift toward a dominance control topology</p><p>Example of dominance control from our work in the alpine tundra. Cover change of the most abundant species (Deschampsia cespitosa, in blue), a grouping of the next most abundant three species (sub-dominants, in rust), and the four next abundant species (moderates, in green) over 16 years under (a) ambient conditions, (b) experimental warming (open-top chambers), and (c) warming plus snow (snow fence) and N (addition) conditions. The structure of interactions in ambient conditions (d; see k for legend) suggests dominance control, with asymmetric competitive interactions among the species groups. Warming (a stress driver) shifted the competitive hierarchy to reorder species abundances (e), while the addition of snow and N (resource availability) intensified dominance (f). Panel (k) explains legend for (d-f), where line width indicates strength of associations and circle size indicates relative abundance of each species group (ranging 5%-75% cover). Abundance of each of 15 species as a function of one functional trait, leaf dry matter content, in (g) ambient conditions, (h) warming, and (i) warming plus snow and N addition. Colors correspond to abundance classes from (a) to (c), height of curves indicate mean species abundance, position on the trait axis indicates mean and SE of trait measurements. Insets (g-i): rank abundance curves for each treatment. While species richness changed very little, increased evenness with rank shifts occurred in (h) and reduced evenness in (i). Experimental site in the moist meadow tundra, Niwot Ridge, Colorado, with a diversity of forbs alongside the abundant bunchgrass (j). See <ref type="bibr">Collins et al. (2022)</ref> for more details of the experimental design and modeling framework. Photo credit: Emily Farrer. regardless of rainfall variability (fig. 3e,f; <ref type="bibr">Hernandez, 2021)</ref>. Following similar dynamics in the tundra, a shift toward dominance control at high N correspond to trait diversity decline and a shift toward the trait optimum of the competitive dominant Bromus species <ref type="bibr">(Hallett, unpublished data)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Positive feedback control in California grasslands at intermediate resource levels</head><p>California grasslands can have well-defined patches of both native perennial bunchgrasses and annual exotic grasses (Figure <ref type="figure">4a-c</ref>). This patchiness persists under some environmental conditions but not others, and global change drivers can push a system both in and out of these conditions <ref type="bibr">(Larios et al., 2013)</ref>. In a series of "invasion when rare" experiments, combined with demographic modeling along a gradient of atmospheric N deposition <ref type="bibr">(Larios et al., 2017)</ref>, native perennial grasses (e.g., Stipa pulchra, Figure <ref type="figure">4b</ref>) were the dominant species at low N availability, while at high rates of N deposition, exotic annuals (e.g., Avena fatua, Figure <ref type="figure">4c</ref>) were the superior competitor, suggesting a reordering of competitive hierarchies as the external driver intensified (Figure <ref type="figure">4d</ref>,f). However, as opposed to cases of dominance control at high or low N, a positive feedback topology occurred at intermediate N inputs (Figure <ref type="figure">4e</ref>). With intermediate external inputs, internal interactions depended on initial conditions: Native bunchgrasses were competitively superior at high abundance but could not successfully invade when starting from a low abundance (Figure <ref type="figure">4h</ref>,<ref type="figure">k</ref>). Exotic annuals also exhibited this positive frequency dependence, where they could not invade when rare but could exclude other invaders when abundant (Figure <ref type="figure">4h</ref>,<ref type="figure">k</ref>).</p><p>Many processes can maintain positive feedbacks in nature. In this case, the presence of the native grass Stipa pulchra promotes a microbial community that in turn enhances its growth and reproduction <ref type="bibr">(Chung et al., 2019;</ref><ref type="bibr">Larios &amp; Suding, 2015)</ref>. Feedbacks that maintain the exotic annual grass Avena fatua dominance in intermediate environmental conditions do not appear to be microbially mediated but rather maintained by high propagule pressure <ref type="bibr">(Larios et al., 2013)</ref>.</p><p>Application of traits in a system with feedback control is not straightforward, as the traits important in these feedbacks are rarely quantified. Here, the native grass Stipa and exotic grass Avena vary in traits along the resource axis, as would be expected: Stipa, which dominates at low N, is resource conservative, and Avena, which dominates at high N levels, has resource acquisitive traits, causing the trait distribution in systems with patches dominated by both to be bimodal <ref type="bibr">(Molinari &amp; D'Antonio, 2014)</ref>. While we can identify the feedbacks as related to differences in plant-soil interactions <ref type="bibr">(Larios &amp; Suding, 2015)</ref>, we suspect that the traits that would best predict these feedbacks are different from those we typically measure in a functional trait framework. Expansion of what we consider important traits (e.g., root exudates, immune system, propagule pressure traits) would allow broader inference.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Summary</head><p>Across these systems, we illustrate how types of external drivers and internal system topology provide a helpful framework for understanding community reorganization under global change. These factors generalize the complexity of global change and the network of interactions that structure communities. We have inferred external drivers and internal topologies using statistical models that encompass competitive, demographic, and functional dimensions <ref type="bibr">(Collins et al., 2022;</ref><ref type="bibr">Farrer et al., 2014;</ref><ref type="bibr">Hallett et al., 2018</ref><ref type="bibr">Hallett et al., , 2019;;</ref><ref type="bibr">Larios et al., 2017)</ref>. Each approach brings important caveats and considerations <ref type="bibr">(Dormann et al., 2017;</ref><ref type="bibr">Feng et al., 2020)</ref>. Yet, in an era of rapid change where solutions are urgently needed, we hope that the benefits of inference and generalization to highlight useful management interventions outweigh their costs.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>APPLICATION TO MANAGEMENT</head><p>Planning in restoration and conservation often starts with specific challenges related to changing biodiversity within a system. For example, common management goals may include reducing the abundance of an invading exotic species, bolstering rare or vulnerable species that are in decline, and re-establishing multiple, service-providing native species. Despite the common compositional focus of these goals, the processes underlying these challenges inevitably vary depending on external drivers and internal topologies. Without taking these into account, management efforts may be ineffective at best, and detrimental at worse. For example, in invaded landscapes of the Western United States, restoration seed mixes have historically included species known to have competitive traits (e.g., crested wheatgrass) as a means of reducing dominant invasive species; however, without anticipating the full role of seeded species within internal networks, these efforts have sometimes pushed communities toward a topology that fails to meet management goals (e.g., with low native diversity; reviewed in <ref type="bibr">Davies et al., 2020)</ref>.</p><p>Here we describe pathways for the EDIT framework to be applied by science-manager teams to both identify the dynamics underlying a management challenge related to global change and evaluate potential solutions. Importantly, while the EDIT framework aims to understand community reorganization in the face of global change, the framework does not assume that one set of dynamics is more or less desirable from a management perspective. Thus, a first step is to identify management goals and desired trajectories of change. Second, science-management partners can work together to combine the necessary data inputs and modeling approaches to implement the EDIT framework. We point to the applied potential of combining modeling approaches with monitoring data sets, functional trait assessments, and experiential knowledge to inform understanding of external drivers and internal topologies in a community. A last step, which we detail in this section, is to determine if interventions are needed and, if so, what they might be. Because the efficacy of an intervention will depend on the external drivers and internal dynamics of the system (Tables <ref type="table">1</ref> and <ref type="table">2</ref>), the EDIT framework can be used to evaluate potential solutions to the identified management challenge. </p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>External drivers</head><p>Based on the EDIT framework, adjusting system inputs (i.e., critical external drivers) is an effective way to moderate outputs of interest to management (i.e., biodiversity response). Yet, it is often difficult to control external drivers through local interventions <ref type="bibr">(Clark et al., 2020;</ref><ref type="bibr">Saavedra et al., 2017)</ref>. Proximal approaches (e.g., suggestions in Table <ref type="table">1a</ref>) often come with impacts that may reduce management efficacy. For instance, to address the dominance of undesirable species that are associated with increased resource availability, grazing could be used to remove excess biomass and nutrients, but it may also cause soil disturbance and selectively remove palatable species that are not the target of management <ref type="bibr">(Fenn et al., 2010;</ref><ref type="bibr">Weiss, 1999)</ref>. Adding carbon (e.g., in the form of sugar or sawdust) can also be used to reduce soil available N, but the reduction may be transient and costly at scale <ref type="bibr">(Clocchiatti et al., 2023)</ref>. Likewise, when it is difficult to establish restoration species due to unsuitable abiotic conditions, the introduction of foundational plants can alleviate an abiotic stress, but also affect other species interactions <ref type="bibr">(Losapio &amp; Schob, 2017;</ref><ref type="bibr">Soliveres &amp; Maestre, 2014)</ref>. Thus, despite the need to address external drivers of global change, local interventions to address the external driver are often difficult. A key decision point may be whether additional or alternative interventions aimed at modifying or supporting the internal network topology can be leveraged (Table <ref type="table">2</ref>).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Dominance control</head><p>When an external driver shifts a system to a dominance topology, interventions that reduce the abundance or interaction strengths of the dominant species might be required <ref type="bibr">(Funk &amp; Wolf, 2016)</ref>. For instance, in serpentine systems (Figure <ref type="figure">3</ref>) that are transitioning from negative frequency control to dominant control with increasing N levels, grazing interventions might target the exotic brome dominating with increased N alongside, efforts to reduce resource inputs. We acknowledge that identifying feasible approaches to selectively reduce the abundance of one species is not trivial. In some cases, like the alpine tundra system where the dominant species is native (Figure <ref type="figure">2</ref>), increased dominance may not warrant costly intervention. In other systems where a shift toward dominance control may lead to ecosystem transformation, the EDIT framework may help science-manager partners identify intervention strategies like fire, thinning, selective grazing, or herbicide application to reduce the strength of competitive effects and shift the topology away from dominance control.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Facilitative control</head><p>Maintaining facilitative topologies requires prioritizing the establishment of particular species that provide refuge for others that may otherwise fail to establish <ref type="bibr">(Soliveres &amp; Maestre, 2014;</ref><ref type="bibr">Thomsen et al., 2010)</ref>. The EDIT framework could help identify thresholds for nurse plant densities that optimize positive interactions (e.g., <ref type="bibr">Brigham &amp; Suding, 2023)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Negative frequency control</head><p>Maintaining networks with strong negative frequency dependence requires a focus on functional diversity and maintenance of complementary species (niche breadth). These types of interventions may best focus on maintaining and perhaps even creating environmental (abiotic and biotic) heterogeneity <ref type="bibr">(Hallett et al., 2017;</ref><ref type="bibr">Stein et al., 2016)</ref>. In frequency control topologies, removal of undesirable species may be most effective when the species' growth rate is depressed. For instance, removal efforts should coincide with low population growth rates of the invader in a serpentine system (Bromus, Figure <ref type="figure">3</ref>) due to its rainfall sensitivity <ref type="bibr">(Hallett et al., 2018)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Positive feedback control</head><p>Positive feedback topologies can be resilient to changing environmental conditions due to the strength of internal feedbacks. Yet, once the environment changes past a certain threshold, abiotic effects can overwhelm internal feedbacks and lead to rapid change <ref type="bibr">(Dudney &amp; Suding, 2020)</ref>. Thus, managers might expect longer periods of stasis and increased risk of abrupt changes under extreme environmental conditions <ref type="bibr">(Turner et al., 2020)</ref>. These systems also require increased attention to initial conditions and legacies, as needed interventions may differ depending on what species dominates initially, and through what type of feedback <ref type="bibr">(Godoy, 2019)</ref>. For instance, protection of intact Stipa grasslands (Figure <ref type="figure">4</ref>) at intermediate N levels is a priority. Breaking feedbacks related to undesirable forms of resilience (e.g., those created by invasive species) might need to combine a removal of legacies with the introduction of new, adapted species that shift priority effects <ref type="bibr">(Cleland et al., 2015;</ref><ref type="bibr">Schantz et al., 2015)</ref>. Restoration of exotic Avena grasslands, for instance, may best target native forbs rather than Stipa at higher N levels <ref type="bibr">(Larios et al., 2017)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Summary</head><p>A core guiding concept across the EDIT framing is that efficacious intervention depends on understanding the dynamics causing biodiversity change (e.g., external drivers, internal topology) rather than patterns in species richness or rank abundances alone <ref type="bibr">(Bergstrom et al., 2021;</ref><ref type="bibr">Lindenmayer &amp; Likens, 2010)</ref>. Opportunities to address external drivers at the local scale may be limited, given global phenomena, and local intervention more often suited to address internal dynamics in the context of global change. Understanding the available options is key, and these options fundamentally depend on an understanding of how community reorganization is occurring in the context of global change.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>CONCLUSIONS</head><p>Continued demands on nature, combined with changing global conditions, will cause substantial shifts in biodiversity during our lifetimes. Some of these changes will be irreversible. Actions to lessen the impact of external drivers of global change (e.g., climate mitigation, pollution reduction, land protection) are necessary but not sufficient to prevent future biodiversity declines. By considering community reorganization as a key component of local diversity change that is driven by external drivers and how these drivers modulate internal dynamics, EDIT can provide a template to guide future biodiversity trajectories that ideally benefit nature and society. We argue here for a balance between a mechanistic, quantitative understanding utilizing models of external and internal dynamics of change and generalizable approaches that can fuel practical inference with available compositional monitoring and functional trait data sets. We hope to have demonstrated how these approaches can be used to diagnose which EDIT components are operating within a given system and how this insight can be used to guide efforts to manage community reorganization through time.</p><p>As we expand from traditional diversity measures to consider external drivers and internal controls on community reorganization, establishing dynamic goals, such as ensuring that systems can adapt to and track global environmental change, will be increasingly possible. These goals are already in use qualitatively, with policymakers often using terms such as ecological integrity <ref type="bibr">(Donohue et al., 2016;</ref><ref type="bibr">Lajeunesse et al., 1995;</ref><ref type="bibr">Suding et al., 2015)</ref>, self-sustainability <ref type="bibr">(Palmer et al., 2014)</ref>, and ecosystem health <ref type="bibr">(D&#237;az et al., 2015)</ref>. Quantitative metrics based on how external drivers modulate internal topology can bridge these qualitative constructs. However, this is new territory, particularly for terrestrial plant-plant interactions, with many unanswered questions: Do these topologies represent distinct, nonrandom states, or is it better to describe community topologies as a gradient of many types of interactions? How do transient and lagged responses in topologies affect our power of inference? By narrowly defining community topologies, do we overlook important complexity (e.g., multilayer networks) that drives community responses to global change?</p><p>While imperfect, multiple modes of inference are essential to make informed, purposeful choices about how to respond to community reorganization due to global environmental change <ref type="bibr">(Beaury et al., 2020;</ref><ref type="bibr">Dudney et al., 2022)</ref>. Institutional support that includes "safe-to-fail" actions and experimentation is key to empowering managers to make innovative decisions that go beyond reactive triage <ref type="bibr">(Aplet &amp; McKinley, 2017)</ref>. Management interventions, particularly in combination with monitoring, can also test our scientific inference in a decision-making space (e.g., the resist-accept-direct framework; <ref type="bibr">Lynch et al., 2021)</ref> and increase adaptive capacity <ref type="bibr">(Dudney et al., 2022)</ref>. In the face of uncertainty under global change, bidirectional exchange between scientists and managers will best refine this framework and inform on-the-ground management interventions.</p><p>Lastly, placing the external drivers and internal topologies into a few baskets is a clear oversimplification. Certainly, different systems may vary in the types of external threats they experience and how they are internally organized in network structure, and our narrow focus on plant-plant interactions in terrestrial plant communities misses important taxa, interaction types, and multilayer networks <ref type="bibr">(Pellissier et al., 2018;</ref><ref type="bibr">Pilosof et al., 2017)</ref>. As disturbance can initiate new assembly <ref type="bibr">(DeSiervo et al., 2023;</ref><ref type="bibr">Kopecky et al., 2023)</ref>, another key unknown is whether management intervention during a period of disassembly may be an effective precursor to guide reassembly toward a desired trajectory of reorganization <ref type="bibr">(Perez-Navarro et al., 2021;</ref><ref type="bibr">Seidl &amp; Turner, 2022)</ref>.</p><p>Even at the broadest level, the drivers and topologies we suggest should be considered hypotheses for testing and refinement. In these times when progress is urgently needed, however, we hope that they offer heuristic value in thinking about the connection between different ecological theories of change and how these theories can provide managers a template to guide opportunities for intervention.</p></div><note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_0"><p>19399170, 2024, 8, Downloaded from https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4322 by University Of Colorado Librari, Wiley Online Library on [02/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_1"><p>19399170, 2024, 8, Downloaded from https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4322 by University Of Colorado Librari, Wiley Online Library on [02/10/2024]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons LicenseF I G U R E 2 Legend on next page.</p></note>
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