Title: The Sphagnum cuspidatum complex: phylogeny, species delimitation, and morphology
Abstract The use of species as a concept is an important metric for assessing biological diversity and ecosystem function. However, delimiting species based on morphological characters can be difficult, especially in aquatic plants that exhibit high levels of variation and overlap. The Sphagnum cuspidatum complex, which includes plants that dominate peatland hollows, provides an example of challenges in species delimitation. Microscopic characters that have been used to define taxa and the possibility that these characters may simply be phenoplastic responses to variation in water availability make species delimitation in this group especially difficult. In particular, the use of leaf shape and serration, which have been used to separate species in the complex, have resulted in divergent taxonomic treatments. Using a combination of high-resolution population genomic data (RADseq) and a robust morphological assessment of plants representing the focal species, we provide evidence to evaluate putative species in this complex. Our data support the recognition of S. cuspidatum, S. fitzgeraldii, S. mississippiense, and S. trinitense as genetically distinct species that can be separated morphologically. These results indicate that S. viride does not differ genetically from S. cuspidatum. Our results are broadly relevant to other aquatic groups where leaf shape and marginal teeth are used to distinguish species.  more » « less
Award ID(s):
1928514
PAR ID:
10557420
Author(s) / Creator(s):
; ; ; ; ; ; ; ;
Publisher / Repository:
Oxford University Press
Date Published:
Journal Name:
Biological Journal of the Linnean Society
Volume:
141
Issue:
4
ISSN:
0024-4066
Page Range / eLocation ID:
466 to 492
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract PremiseSphagnum magellanicum(Sphagnaceae, Bryophyta) has been considered to be a single semi‐cosmopolitan species, but recent molecular analyses have shown that it comprises a complex of at least seven reciprocally monophyletic groups, that are difficult or impossible to distinguish morphologically. MethodsNewly developed barcode markers and RADseq analyses were used to identify species among 808 samples from 119 sites. Molecular approaches were used to assess the geographic ranges of four North American species, the frequency at which they occur sympatrically, and ecological differentiation among them. Microhabitats were classified with regard to hydrology and shade. Hierarchical modelling of species communities was used to assess climate variation among the species. Climate niches were projected back to 22,000 years BP to assess the likelihood that the North American species had sympatric ranges during the late Pleistocene. ResultsThe species exhibited parallel morphological variation, making them extremely difficult to distinguish phenotypically. Two to three species frequently co‐occurred within peatlands. They had broadly overlapping microhabitat and climate niches. Barcode‐ versus RADseq‐based identifications were in conflict for 6% of the samples and always involvedS. diabolicumvs.S. magniae. ConclusionsThese species co‐occur within peatlands at scales that could permit interbreeding, yet they remain largely distinct genetically and phylogenetically. The four cryptic species exhibited distinct geographic and ecological patterns. Conflicting identifications from barcode vs. RADseq analyses forS. diabolicumversusS. magniaecould reflect incomplete speciation or hybridization. They comprise a valuable study system for additional work on climate adaptation. 
    more » « less
  2. The grassland leafhopper genus Aconurella is widespread in the Old World. Species of this genus are difficult to identify by traditional morphological characters but the morphology-based species classification in this genus has not previously been tested using molecular data. This study analysed DNA sequence data from two mitochondrial genes (COI, 16S) and one nuclear gene (ITS2) to infer the phylogenetic relationships and status of five previously recognized Aconurella species and compare the performance of different molecular species-delimitation methods using single and multiple loci. The analysis divided the included haplotypes into five well-supported subclades, most corresponding to existing morphology-based species concepts. However, different molecular species delimitation methods (jMOTU, ABGD, bPTP, GMYC and BPP) yielded somewhat different results, suggesting the presence of between 4 and 8 species, sometimes lumping the haplotypes of Aconurella diplachnis and Aconurella sibirica into a single species or recognizing multiple putative species within Aconurella prolixa. Considering the different results yielded by various methods employing single loci, the BPP method, which combines data from multiple loci, may be more reliable for delimiting species of Aconurella. Our results suggest that the morphological characters previously used to identify these species are reliable and adequately reflect boundaries between genetically distinct taxa. 
    more » « less
  3. Bond, Jason (Ed.)
    Abstract Morphology has long been used to classify and identify living organisms. However, taxonomic descriptions are often limited to qualitative descriptions of size and shape, making identification difficult due to the subjective language used to describe complex shapes. Additionally, for some taxa, there are few reliable qualitative characters available for delimitation that have yet to be tested objectively in a phylogenetic context. Solifugae is one such example. The order, Solifugae, is recognized from the other arachnid orders by the possession of large, powerful jaws or chelicerae. Male cheliceral morphology is the leading diagnostic character system in solifuge systematics and is the basis for much of solifuge current taxonomy. Female chelicerae, on the other hand, are reportedly deeply conserved and much of the species identification is based on female operculum morphology. To elucidate patterns of chelicerae and opercula trait evolution within the solifuge family, Eremobatidae, we used a 2-dimenstional morphological analysis using an Elliptical Fourier approach for closed outlines, in addition to an analysis of traditionally used measures in a phylogenetic context. Using ancestral state reconstruction and ultra-conserved elements, we assessed the taxonomic utility of female cheliceral and opercular morphology, and we evaluated which male morphological characters reflect shared, derived ancestry. Investigation into ubiquitously used character sets, in addition to newly proposed characters herein, illustrates the complex evolution of traits with high levels of convergence. Our results provide taxonomic insight into future, higher level taxonomic revisions of Eremobatidae. 
    more » « less
  4. Abstract PremiseStudies into the evolution and development of leaf shape have connected variation in plant form, function, and fitness. For species with consistent leaf margin features, patterns in leaf architecture are related to both biotic and abiotic factors. However, for species with inconsistent leaf shapes, quantifying variation in leaf shape and the effects of environmental factors on leaf shape has proven challenging. MethodsTo investigate leaf shape variation in a species with inconsistently shaped leaves, we used geometric morphometric modeling and deterministic techniques to analyze approximately 500 digitized specimens ofCapsella bursa‐pastoriscollected throughout the continental United States over 100 years. We generated a morphospace of the leaf shapes and modeled leaf shape as a function of environment and time. ResultsLeaf shape variation ofC. bursa‐pastoriswas strongly associated with temperature over its growing season, with lobing decreasing as temperature increased. While we expected to see changes in variation over time, our results show that the level of leaf shape variation was consistent over the 100 years. ConclusionsOur findings showed that species with inconsistent leaf shape variation can be quantified using geometric morphometric modeling techniques and that temperature is the main environmental factor influencing leaf shape variation. 
    more » « less
  5. Abstract Species delimitation is an imperative first step toward understanding Earth's biodiversity, yet what constitutes a species and the relative importance of the various processes by which new species arise continue to be debatable. Species delimitation in spiders has traditionally used morphological characters; however, certain mygalomorph spiders exhibit morphological homogeneity despite long periods of population‐level isolation, absence of gene flow, and consequent high degrees of molecular divergence. Studies have shown strong geographic structuring and significant genetic divergence among several species complexes within the trapdoor spider genusAptostichus, most of which are restricted to the California Floristic Province (CAFP) biodiversity hotspot. Specifically, theAptostichus icenogleicomplex, which comprises the three sibling species,A. barackobamai,A. isabella, andA. icenoglei, exhibits evidence of cryptic mitochondrial DNA diversity throughout their ranges in Northern, Central, and Southern California. Our study aimed to explicitly test species hypotheses within this assemblage by implementing a cohesion species‐based approach. We used genomic‐scale data (ultraconserved elements, UCEs) to first evaluate genetic exchangeability and then assessed ecological interchangeability of genetic lineages. Biogeographical analysis was used to assess the likelihood of dispersal versus vicariance events that may have influenced speciation pattern and process across the CAFP's complex geologic and topographic landscape. Considering the lack of congruence across data types and analyses, we take a more conservative approach by retaining species boundaries withinA. icenoglei. 
    more » « less