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Title: Coarse-Grained Simulations of DNA and RNA Systems with Oxdna and Oxrna Models: Tutorial
We present a tutorial on setting-up the oxDNA coarse-grained model for simulations of DNA and RNA nanotechnology. The model is a popular tool used both by theorists and experimentalists to simulate nucleic acid systems both in biology and nanotechnology settings. The tutorial is aimed at new users asking "Where should I start if I want to use oxDNA". We assume no prior background in using the model. This tutorial shows basic examples that can get a novice user started with the model, and points the prospective user towards additional reading and online resources depending on which aspect of the model they are interested in pursuing.  more » « less
Award ID(s):
2239518
PAR ID:
10566580
Author(s) / Creator(s):
; ;
Publisher / Repository:
ACM Digital Library
Date Published:
ISBN:
9798350369663
Format(s):
Medium: X
Location:
ACM
Sponsoring Org:
National Science Foundation
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