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   Hasanzadeh, Arman; Hajiramezanali, Ehsan Duffield; Narayanan, Krishna; Zhou, Mingyuan; Qian, Xiaoning (January 2019, Advances in neural information processing systems)

   Semi-implicit graph variational auto-encoder (SIG-VAE) is proposed to expand the flexibility of variational graph auto-encoders (VGAE) to model graph data. SIG-VAE employs a hierarchical variational framework to enable neighboring node sharing for better generative modeling of graph dependency structure, together with a Bernoulli-Poisson link decoder. Not only does this hierarchical construction provide a more flexible generative graph model to better capture real-world graph properties, but also does SIG-VAE naturally lead to semi-implicit hierarchical variational inference that allows faithful modeling of implicit posteriors of given graph data, which may exhibit heavy tails, multiple modes, skewness, and rich dependency structures. SIG-VAE integrates a carefully designed generative model, well suited to model real-world sparse graphs, and a sophisticated variational inference network, which propagates the graph structural information and distribution uncertainty to capture complex posteriors. SIG-VAE clearly outperforms a simple combination of VGAE with variational inference, including semi-implicit variational inference~(SIVI) or normalizing flow (NF), which does not propagate uncertainty in its inference network, and provides more interpretable latent representations than VGAE does. Extensive experiments with a variety of graph data show that SIG-VAE significantly outperforms state-of-the-art methods on several different graph analytic tasks. 

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2. Semi-Implicit Graph Variational Auto-Encoders

   Hasanzadeh, Arman; Hajiramezanali, Ehsan; Narayanan, Krishna; Duffield, Nick; Zhou, Mingyuan; Qian, Xiaoning (December 2019, Advances in neural information processing systems)

   Semi-implicit graph variational auto-encoder (SIG-VAE) is proposed to expand the flexibility of variational graph auto-encoders (VGAE) to model graph data. SIG-VAE employs a hierarchical variational framework to enable neighboring node sharing for better generative modeling of graph dependency structure, together with a Bernoulli-Poisson link decoder. Not only does this hierarchical construction provide a more flexible generative graph model to better capture real-world graph properties, but also does SIG-VAE naturally lead to semi-implicit hierarchical variational inference that allows faithful modeling of implicit posteriors of given graph data, which may exhibit heavy tails, multiple modes, skewness, and rich dependency structures. SIG-VAE integrates a carefully designed generative model, well suited to model real-world sparse graphs, and a sophisticated variational inference network, which propagates the graph structural information and distribution uncertainty to capture complex posteriors. SIG-VAE clearly outperforms a simple combination of VGAE with variational inference, including semi-implicit variational inference~(SIVI) or normalizing flow (NF), which does not propagate uncertainty in its inference network, and provides more interpretable latent representations than VGAE does. Extensive experiments with a variety of graph data show that SIG-VAE significantly outperforms state-of-the-art methods on several different graph analytic tasks. 

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3. Improving Inference for Neural Image Compression

   Yang, Yibo; Bamler, Robert; Mandt, Stephan (October 2020, Advances in neural information processing systems)

   null (Ed.)

   We consider the problem of lossy image compression with deep latent variable models. State-of-the-art methods [Ballé et al., 2018, Minnen et al., 2018, Lee et al., 2019] build on hierarchical variational autoencoders (VAEs) and learn inference networks to predict a compressible latent representation of each data point. Drawing on the variational inference perspective on compression [Alemi et al., 2018], we identify three approximation gaps which limit performance in the conventional approach: an amortization gap, a discretization gap, and a marginalization gap. We propose remedies for each of these three limitations based on ideas related to iterative inference, stochastic annealing for discrete optimization, and bits-back coding, resulting in the first application of bits-back coding to lossy compression. In our experiments, which include extensive baseline comparisons and ablation studies, we achieve new state-of-the-art performance on lossy image compression using an established VAE architecture, by changing only the inference method. 

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4. Identification of Linear Non-{G}aussian Latent Hierarchical Structure

   Xie, Feng; Huang, Biwei; Chen, Zhengming; He, Yangbo; Geng, Zhi; Zhang, Kun (July 2022, Proceedings of Machine Learning Research)

   Chaudhuri, Kamalika; Jegelka, Stefanie; Song, Le; Szepesvari, Csaba; Niu, Gang; Sabato, Sivan (Ed.)

   Traditional causal discovery methods mainly focus on estimating causal relations among measured variables, but in many real-world problems, such as questionnaire-based psychometric studies, measured variables are generated by latent variables that are causally related. Accordingly, this paper investigates the problem of discovering the hidden causal variables and estimating the causal structure, including both the causal relations among latent variables and those between latent and measured variables. We relax the frequently-used measurement assumption and allow the children of latent variables to be latent as well, and hence deal with a specific type of latent hierarchical causal structure. In particular, we define a minimal latent hierarchical structure and show that for linear non-Gaussian models with the minimal latent hierarchical structure, the whole structure is identifiable from only the measured variables. Moreover, we develop a principled method to identify the structure by testing for Generalized Independent Noise (GIN) conditions in specific ways. Experimental results on both synthetic and real-world data show the effectiveness of the proposed approach. 

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5. Analytical Probability Distributions and EM-Learning for Deep Generative Networks

   Balestriero, Randall; Paris, Sebastien; Baraniuk, Richard G. (January 2020, Advances in neural information processing systems)

   Deep Generative Networks (DGNs) with probabilistic modeling of their output and latent space are currently trained via Variational Autoencoders (VAEs). In the absence of a known analytical form for the posterior and likelihood expectation, VAEs resort to approximations, including (Amortized) Variational Inference (AVI) and Monte-Carlo (MC) sampling. We exploit the Continuous Piecewise Affine (CPA) property of modern DGNs to derive their posterior and marginal distributions as well as the latter's first moments. These findings enable us to derive an analytical Expectation-Maximization (EM) algorithm that enables gradient-free DGN learning. We demonstrate empirically that EM training of DGNs produces greater likelihood than VAE training. Our findings will guide the design of new VAE AVI that better approximate the true posterior and open avenues to apply standard statistical tools for model comparison, anomaly detection, and missing data imputation. 

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