<?xml-model href='http://www.tei-c.org/release/xml/tei/custom/schema/relaxng/tei_all.rng' schematypens='http://relaxng.org/ns/structure/1.0'?><TEI xmlns="http://www.tei-c.org/ns/1.0">
	<teiHeader>
		<fileDesc>
			<titleStmt><title level='a'>Lifetimes and timescales of tropospheric ozone</title></titleStmt>
			<publicationStmt>
				<publisher>UC Press</publisher>
				<date>01/01/2024</date>
			</publicationStmt>
			<sourceDesc>
				<bibl> 
					<idno type="par_id">10569668</idno>
					<idno type="doi">10.1525/elementa.2023.00112</idno>
					<title level='j'>Elem Sci Anth</title>
<idno>2325-1026</idno>
<biblScope unit="volume">12</biblScope>
<biblScope unit="issue">1</biblScope>					

					<author>Michael J Prather</author><author>Xin Zhu</author>
				</bibl>
			</sourceDesc>
		</fileDesc>
		<profileDesc>
			<abstract><ab><![CDATA[<p>The lifetime of tropospheric O3 is difficult to quantify because we model O3 as a secondary pollutant, without direct emissions. For other reactive greenhouse gases like CH4 and N2O, we readily model lifetimes and timescales that include chemical feedbacks based on direct emissions. Here, we devise a set of artificial experiments with a chemistry-transport model where O3 is directly emitted into the atmosphere at a quantified rate. We create 3 primary emission patterns for O3, mimicking secondary production by surface industrial pollution, that by aviation, and primary injection through stratosphere–troposphere exchange (STE). The perturbation lifetimes for these O3 sources includes chemical feedbacks and varies from 6 to 27 days depending on source location and season. Previous studies derived lifetimes around 24 days estimated from the mean odd-oxygen loss frequency. The timescales for decay of excess O3 varies from 10 to 20 days in northern hemisphere summer to 30 to 40 days in northern hemisphere winter. For each season, we identify a single O3 chemical mode applying to all experiments. Understanding how O3 sources accumulate (the lifetime) and disperse (decay timescale) provides some insight into how changes in pollution emissions, climate, and stratospheric O3 depletion over this century will alter tropospheric O3. This work incidentally found 2 distinct mistakes in how we diagnose tropospheric O3, but not how we model it. First, the chemical pattern of an O3 perturbation or decay mode does not resemble our traditional view of the odd-oxygen family of species that includes NO2. Instead, a positive O3 perturbation is accompanied by a decrease in NO2. Second, heretofore we diagnosed the importance of STE flux to tropospheric O3 with a synthetic “tagged” tracer O3S, which had full stratospheric chemistry and linear tropospheric loss based on odd-oxygen loss rates. These O3S studies predicted that about 40% of tropospheric O3 was of stratospheric origin, but our lifetime and decay experiments show clearly that STE fluxes add about 8% to tropospheric O3, providing further evidence that tagged tracers do not work when the tracer is a major species with chemical feedbacks on its loss rates, as shown previously for CH4.</p>]]></ab></abstract>
		</profileDesc>
	</teiHeader>
	<text><body xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xlink="http://www.w3.org/1999/xlink">
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="1.">Introduction</head><p>Ozone (O3) is an essential but dangerous component of the atmosphere and the air we breathe. Tropospheric ozone is detrimental to human and plant health and also responsible for about 12% of the greenhouse-gas driven climate change to date <ref type="bibr">(Szopa et al 2021)</ref>; yet, it is essential as the primary source of hydroxyl radicals (OH) that cleanse the lower atmosphere of many pollutants <ref type="bibr">(Levy, 1972)</ref>. The total ozone column, predominantly stratospheric, shields us from ultraviolet-B that damages skin cells <ref type="bibr">(Roffo, 1939;</ref><ref type="bibr">Blum, 1959)</ref>. The natural chemistry of stratospheric O3 and its catalytic depletion by a range of anthropogenic trace gases is well recognized <ref type="bibr">(Chapman, 1930;</ref><ref type="bibr">Bates and Nicolet, 1950;</ref><ref type="bibr">Junge, 1962;</ref><ref type="bibr">Danielsen, 1968;</ref><ref type="bibr">Johnston, 1971;</ref><ref type="bibr">Molina and Rowland, 1974;</ref><ref type="bibr">WMO, 2022)</ref>. In the troposphere, O3 is a secondary pollutant meaning that it is produced chemically from other pollutants <ref type="bibr">(Haagen-Smit, 1952;</ref><ref type="bibr">Haagen-Smit and Fox, 1955;</ref><ref type="bibr">Chameides and Walker, 1973;</ref><ref type="bibr">Fishman and Crutzen, 1978;</ref><ref type="bibr">Logan et al., 1981)</ref>. Because of this lack of direct emissions, our understanding and modeling of O3 is quite different from that of other chemical pollutants and greenhouse gases. For example, we do not create atmospheric budgets tied to emissions, and thus we do not derive lifetimes as we do for other gases like methane (CH4) based on the atmospheric burden divided by emissions. Here, we take a new approach to the study of main text tropospheric O3 by simulating a direct emission source of O3 and then following its perturbation on the background atmosphere to derive that source's lifetime and thence the timescale to remove that excess O3.</p><p>We study the perturbation to O3 from hypothesized primary emissions associated with (i) surface industrial pollution, (ii) aviation, and (iii) stratosphere-troposphere exchange using the UC Irvine chemistry-transport model (UCI CTM) with stratospheric-plus-tropospheric chemistry. A 3D emission pattern with 100 Tg-O3 yr -1 is maintained in these experiments. We diagnose the pattern and burden of excess O3 over different meteorological years. Nominally, we would calculate the 'lifetime' of tropospheric O3 following the standard definition: global O3 burden (Tg) at steady state divided by total emissions or total losses (Tg yr -1 ). The budget-based lifetime for a trace gas like methyl bromide (CH3Br) is based on the burden in all connected reservoirs (i.e., stratosphere, troposphere, ocean mixed layer) <ref type="bibr">(Butler, 1994)</ref>, but this will not work for tropospheric O3. The quantity derived here is the 'perturbation lifetime' since we ratio the excess burden to the excess emissions. Note that the perturbation lifetime includes the chemical feedbacks, which the global lifetime does not, e.g., the CH4 perturbation lifetime is about 1.4 times larger than the global lifetime because of methane's feedback on its chemical loss rate <ref type="bibr">(Isaksen and Hov, 1987)</ref>.</p><p>We follow the decay of the excess O3 after emissions are cut and calculate a timescale for the O3 perturbation from the long-term e-fold rate. The timescale is nominally that of the longest-lived chemical mode involving tropospheric O3, which is an inherent property of the atmosphere; whereas the lifetime depends on the location of emissions because the emissions are exposed to different photochemical activity. This relationship between lifetimes and timescales is well known for CH4 <ref type="bibr">(Isaksen and Hov, 1987;</ref><ref type="bibr">Prather, 1994</ref><ref type="bibr">Prather, , 1996))</ref>, CH3Br <ref type="bibr">(Butler, 1994;</ref><ref type="bibr">Prather, 1997)</ref> and other gases <ref type="bibr">(Prather, 2007)</ref>, but has not yet been explored for tropospheric O3. Because chemical feedbacks are included in both the temporal decay and the perturbation lifetime, both values are expected to be similar.</p><p>The experimental design, O3 chemistry, and specific experiments are presented in Section 2. The steadystate lifetime and patterns are analysed in Section 3. The decay patterns and timescales are given in Section 4. The results here are inconsistent with some conclusions about the stratospheric influence on tropospheric O3 using tagged tracers like O3S <ref type="bibr">(Follows and Austin, 1992)</ref>, and these are discussed with the conclusions about O3 lifetime and timescales in Section 5.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.">Methods</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.1.">Defining production and loss of tropospheric O3</head><p>In current chemistry-climate or chemistry-transport models (CCMs or CTMs), the chemical continuity equation for O3 is usually calculated correctly using all the rates directly involving O3. The local, gridcell equation for O3 chemical tendency looks like</p><p>where all chemical reactions directly involving [O3] are included. Because of the rapid exchange of O and O3, the first three terms largely cancel one another; and the timescales of the system are not represented by the negative loss terms divided by <ref type="bibr">[O3]</ref>. For example, the photolysis frequency J(O3) does not represent any of the timescales of the O3-O system as shown in the eigenvalue decomposition of Chapman O3 chemistry (Section 3 of <ref type="bibr">Prather, 2007)</ref>. The desire to remove these large rates from the O3 chemical budget, in part to estimate a more realistic loss rate and timescale, has led to complex definitions of the family grouping called odd oxygen,</p><p>Because O3 is the dominant species in the OX family, the loss of OX is expected to represent the lifetime and timescales of O3 in the stratosphere or troposphere <ref type="bibr">(Nicolet, 1975;</ref><ref type="bibr">Thrush, 1980;</ref><ref type="bibr">Bates and Jacob, 2019;</ref><ref type="bibr">Badia et al., 2021)</ref>. The problem is that these family groupings, while intuitive and comforting, do not accurately produce the correct times scales or patterns of perturbations to the chemical system. We show later that the OX family is not one of the inherent chemical mode patterns of the troposphere, and has the wrong timescales.</p><p>The tropospheric chemistry community has for the most part settled on diagnosing production and loss of tropospheric O3 in the global models from the major rates for the OX budget, e.g., from Table <ref type="table">4</ref>.12 in the 2001 IPCC assessment <ref type="bibr">(Prather et al., 2001)</ref> to Table <ref type="table">6</ref>.3 in the 2021 assessment <ref type="bibr">(Szopa et al., 2021)</ref>..</p><p>For the global troposphere, the history of major model intercomparison projects (MIPs) have reported POx and LOx in the range of 3500-5000 Tg-O3 yr -1 with the balance of the budget made up of a source from stratosphere-troposphere exchange (400-600 Tg-O3 yr -1 ) and a sink to surface deposition (800-1200 Tg-O3 yr -1 ) <ref type="bibr">(Prather et al., 2001;</ref><ref type="bibr">Stevenson et al., 2013</ref><ref type="bibr">, Young et al., 2018;</ref><ref type="bibr">Archibald et al., 2020;</ref><ref type="bibr">Griffiths et al., 2021;</ref><ref type="bibr">Szopa et al., 2021)</ref>. These diagnostics reflect the major rates affecting O3; they are now standard diagnostics for current chemistry models; and they have served as excellent diagnostics for understanding consistency and differences in the model calculated O3.</p><p>The extensive use of POX and LOX has created two problems. First, everyone has known that the true O3 chemical tendency (dO3/dt, Equation <ref type="formula">1</ref>) is not exactly equal to POX-LOX. Recently, the Archibald et al.</p><p>(2020) study of tropospheric O3 trends made a substantial effort to include the dO3/dt budget term in analysing the four models that reported it, finding that it provided "a cleaner &#8230; account of the tendency of ozone" due to chemical processes. Hopefully, this effort will continue in future MIPs.</p><p>The second major problem with the OX terms is the assumption that the O3 chemical tendency equation can be written as at</p><p>where the production POX is constant, independent of [O3], and the loss frequency is calculated simply from LOX,</p><p>This approach is popular and persistent because it puts O3 in a parallel framework with other trace gases where production is due to sources that are independent of the species concentration and where loss is linearly proportional to the species concentration.</p><p>Follows and Austin (1992) with a 2D model and <ref type="bibr">Roelofs and Lelieveld (1997)</ref> with a 3D model developed the approach of using the tagged tracer O3S in order to follow stratospheric O3 entering the troposphere through stratosphere-troposphere exchange (STE). Using their photochemical box model, Follows and Austin (their Figure <ref type="figure">10</ref>) followed the decay of an O3 perturbation using full chemistry as is done here with a 3D model, but they reverted to using the simplified and inaccurate linear assumptions about LOX (their Equation <ref type="formula">11</ref>). This methodology continues in multi-model assessments of O3 and climate change, such as <ref type="bibr">Williams et al. (2019)</ref> and <ref type="bibr">Abalos et al. (2020)</ref>. <ref type="bibr">Wild et al. (2003)</ref> used this O3S method but recognized that "this [approach] is not a correct linearization of the impact of an added flux of stratospheric ozone," yet we have all continued using this approach for the last two decades. The loss frequency for O3 should be derived from a linearization of the chemical tendency</p><p>d[O3] (7) but 3D models are not prepared to do chemical linearizations every time step. Using the ATom-1 observations, Prather et al. (2023, Figure 68) showed that LOX is not precisely linear in [O3], and more importantly that POX is not constant but decreases with increasing [O3]. Hence, fO3chem TRUE is 20-40% larger than fO3chem LOX , and thus currently modeled O3S values are too large. From the limited coverage of ATom observations we cannot derive a global pattern of fO3chem TRUE , but here we can calculate hemispheric mean values from the decay of O3 perturbations.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.2.">The control run</head><p>The baseline for this study is a UCI CTM 5-year control run (CTRL) for years 2000 through 2004 that includes stratospheric-plus-tropospheric gas-phase chemistry with typical emissions and boundary conditions for years 2000 through 2004 (see <ref type="bibr">Tang and Prather, 2012;</ref><ref type="bibr">Holmes et al., 2013;</ref><ref type="bibr">2014)</ref>. The CTM is driven by prescribed meteorology from the European Centre for Medium-Range Weather Forecasts (ECMWF) Integrated Forecast System (IFS, Cycle 38r1). Use of historical, specified meteorological fields for 1 Jan 2000 through 31 Dec 2004 means that any chemical perturbation can be tracked accurately to within the relative precision of the non-linear chemical solver, about 10 -5 . With a chemistry-climate model (CCM), these experiments would require a number of ensembles to average the perturbations over climate variability, but here a single perturbation and control simulation are adequate. A summary of the UCI CTM chemistry and conditions for the CTRL run are given in the Appendix Tables A1-A3. A summary of the tropospheric O3 budget (Table <ref type="table">1</ref>) has the UCI CTM falling within the range of models tabulated in recent MIPs <ref type="bibr">(Young et al., 2018;</ref><ref type="bibr">Archibald et al., 2020;</ref><ref type="bibr">Griffiths et al., 2021)</ref>.</p><p>For this study it is essential to be able to separate the troposphere from stratosphere, and thus we use instantaneous 3D fields of O3 and e90, our artificial tracer of tropospheric air <ref type="bibr">(Prather et al., 2011)</ref>. The e90 tracer has a constant rate of decay (90 days) and is emitted uniformly over the globe at a rate to generate an average abundance of 100 ppb (nmol/mol). In this version q75 of our CTM, e90 = 90 ppb coincides with the WMO tropopause and is used categorize each grid cell as either tropospheric or stratospheric. Monthly averages of O3 and e90, or even WMO tropopauses, smear across the synoptic variability of the tropopause, causing systematic errors in diagnosing tropospheric O3. We compromise on continuity versus data volume by using 73 snapshots per year (every 5 days) that record the 3D mass fields of O3, e90, and dry-air in each cell. The zonal-mean altitude-by-latitude color maps of CTRL stratospheric and tropospheric O3 are shown in Figure <ref type="figure">1</ref> and <ref type="figure">Figures A1-A2</ref>. Results here average over 18 snapshots in the 90 days of northern summer (JJA) over the five years and are typical of other models and observations. The seasonal and zonal average for stratospheric O3 includes only stratospheric cells, so that if at least one of the 320 longitude cells over the 18 snapshots is stratospheric a non-blank value is shown for that pixel. Thus, the same pixel can be included in both figures.</p><p>The annual variability in global mean stratospheric and tropospheric O3 in Dobson units (DU) is shown in Figure <ref type="figure">2</ref> and Figure A3. Over the 5-year CTRL run, the tropospheric mean column varies from about 28 DU (Feb) to a sharp peak of about 34 DU (Oct) occurring within a 10-day period (1 DU global = 10.9 Tg-O3). These values are consistent with the observed columns (about 30 DU) and seasonal cycle (minimum in DJF) found by <ref type="bibr">Ziemke et al. (2006;</ref><ref type="bibr">2012)</ref>. This synoptic 5-day variability as well as the interannual changes are driven by the meteorological changes (H2O, T, transport) since emissions vary only monthly and are recycled each year. Likewise, the lower boundary conditions for CH4, H2, and N2O are constant.</p><p>Lightning NO emissions are tied to convection but vary at most by 6% from year to year. In contrast, the stratospheric column varies smoothly, from 270 DU (~Sep-Oct) to about 290 DU (Mar). This stratospheric O3 annual cycle along with the longer-term quasi-biennial variability matches latitudinal patterns seen in satellite observations (Figure <ref type="figure">9</ref> of <ref type="bibr">Ruiz and Prather, 2022)</ref>. Looking at the synoptic variability, one might infer that the sharp tropospheric O3 peak in Oct is carried into the stratospheric O3 column and thus long-term tropospheric O3 trends and variability will alter the stratospheric O3 column.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.3.">Simulating direct O3 emissions</head><p>Trying to diagnose the budget lifetime and timescales of tropospheric O3 perturbations from a combination of reaction rates or their derivatives with respect to O3 is an unrewarding task. So instead we propose a CTM model experiment in which we directly emit O3 at a fixed rate (100 Tg-O3 yr -1 ) for several years and follow the increased burden of O3. This perturbation allows all of tropospheric chemistry to change in response and gives us the perturbation lifetime for that specific pattern of emissions. Then, we cut emissions and watch the decay time of the chemical modes so we can diagnose the timescale of O3 perturbations. Remembering the eigenvalue decomposition of the system <ref type="bibr">(Prather, 2007)</ref>, we expect the lifetime (i.e., burden in this case) to depend on the location-timing of emissions, but the timescale of each chemical mode will be a property of the CTRL atmosphere and independent of the emission pattern. The amplitude of each mode, however, will depend on the emission pattern.</p><p>The direct O3 emissions are added as a perturbation to a control run (CTRL) simulation and are designated eO3x, where 'x' designates the specific case, see Table <ref type="table">1</ref>. Three different types of direct O3 emissions are explored: eO3avi, 100 Tg-O3 emitted per year using the same pattern as aviation NOx; eO3srf, 100 Tg-O3 yr -1 as near-surface emissions from east Asia (34&#176;N-40&#176;N; 110&#176;E-140&#176;E), consistent with the net production of 130 Gg per day found for East Asia <ref type="bibr">(Wild and Prather, 2006)</ref>; and eO3ste1, 100 Tg-O3 yr -1 centred on the subtropical jets, meant to simulate a fraction of the net influx of stratospheric O3 (as modeled in <ref type="bibr">Prather et al. 2011;</ref><ref type="bibr">Ruiz and Prather, 2022)</ref>. The first eO3ste1 experiment resulted in large amounts of O3 accumulating in the stratosphere, which complicated the calculation of O3 lifetime. Thus, we relocated the emissions and reran this experiment as eO3ste2, see the latitude shift of emissions in Table <ref type="table">1</ref>. To compare the O3 perturbation from direct emissions versus the secondary O3 produced from aviation NOx, we added experiment eNOavi, for which the aviation NOx emissions (0.85 Tg-N y -1 ) are doubled. See Table <ref type="table">1</ref> for details of each experiment.</p><p>The eO3x experiments are run for 4 years (2000.0 to 2004.0). For eO3avi, eO3srf, and eO3ste1, we run separate 6-month decay experiments, cutting the direct O3 emissions at 2003.5 (1 Jul) and 2004.0 (1 Jan).</p><p>Figure <ref type="figure">2</ref> shows the resulting perturbations in DU for eO3avi tropospheric (blue) and stratospheric (red) O3. Figure <ref type="figure">A4</ref> shows parallel results for eO3srf and eO3ste1. Our estimated lifetime for the eO3avi O3 perturbation, 20 days, is similar to most previous values for total tropospheric lifetime (e.g., <ref type="bibr">Badia et al., 2021)</ref>. Thus, the O3 lifetime is sub-seasonal, &lt;1 month; and O3 perturbations will not mix between hemispheres and will respond to the seasonal variations in photochemical activity. With a fixed boundary condition on CH4, the longest chemical response will likely be CO (~2 months) and thus the spin-up and decay times as seen are at most 6 months. Statistics on the O3 perturbations (Table <ref type="table">1</ref>) use only the 2 nd through 4 th year.</p><p>Several experiments (eO3avi, eO3ste1, eO3ste2) result in a minor fraction of O3 emissions occurring in the stratosphere. We tried to minimize direct stratospheric emissions but did not rewrite the CTM code to turn on/off emissions at every time step for each grid cell based on the e90 tropopause definition. In our studies, these direct stratospheric emissions occur well below 100 hPa and thus accumulate mainly in the lowermost extra-tropical stratosphere (LMS). Ozone chemistry in the LMS, except for the Antarctic ozone hole, is slow, and transport into the troposphere occurs mostly within a year. Thus, direct O3 emissions into the LMS tend to accumulate until they are transported into the troposphere via stratosphere-troposphere exchange (STE), and thus the 100 Tg-O3 yr -1 emissions in eO3avi, eO3ste1, and eO3ste2 can be treated tropospheric emissions albeit with some seasonal delay from the STE flux.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.">Results</head><p>The lifetimes and patterns of the O3 perturbations are distinct to each type of emission. The perturbations are all responding to tropospheric chemistry that is damping the perturbations at different locations and seasons according the photochemical reactivity. For a quick survey of the profiles and variability of production and loss of OX over the Pacific basin from a multi-model comparison, see Figure <ref type="figure">3bc</ref> of <ref type="bibr">Prather et al. (2017)</ref> and from the NASA Atmospheric Tomography Mission (ATom) observations, see Figures 6-7 of <ref type="bibr">Prather et al. (2023)</ref>. From the observations, there is large high-frequency variability on the scale of a model grid; and from the models, there are large differences in mean profiles.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.">Spatial pattern of O3 perturbations</head><p>The zonal mean (latitude by altitude) pattern of O3 absolute perturbations (ppb) are shown in Figure <ref type="figure">3</ref> for JJA, showing eO3avi (left) and eO3srf (right) separated by stratosphere (top) and troposphere (bottom).</p><p>Parallel plots are shown for all four seasons and all five experiments in Figures <ref type="figure">A5-A9</ref>. For these plots, the stratospheric and tropospheric color bars are same (0 to 12 ppb); plotting relative differences would greatly reduce the intensity of the stratospheric perturbation.</p><p>Aviation emissions, eO3avi, include a number of high-latitude, stratospheric flight routes below 12 km altitude (lowest horizontal black line in Figure <ref type="figure">3</ref>). These emissions are seen clearly by the build-up of a 10-12 ppb perturbation from 8 to 12 km in the stratosphere. There is some transport of excess O3 to higher altitudes in the tropics along isentropic surfaces, but this does not get above 16 km altitude and stays in the LMS. Chemical loss of the excess O3 is more rapid in the troposphere as is vertical mixing, and the peak build-up in northern mid-latitude flight lanes (8-12 km) is less, about 6 ppb. In northern summer, the loss of excess O3 is rapid in the lower troposphere, and the excess O3 barely reaches the surface with perturbations of ~1 ppb. In northern winter (DJF, Figure <ref type="figure">A5</ref>) with much slower chemistry, surface perturbations are much greater, ~3 ppb. Emissions in the southern mid-latitudes are much smaller and barely show up in the stratosphere (~1 ppb) and not in the troposphere with this color scale.</p><p>For surface emissions (eO3srf), the peak zonal mean perturbations are 4-6 ppb in the latitude-altitude region of emissions (black box in Figure <ref type="figure">3</ref>). These emissions are mixed upward to the tropopause at levels of ~2 ppb but fall off rapidly in the subtropics and at higher latitudes, again because of the rapid loss of excess O3 in the northern summer lower troposphere. It is interesting that summertime O3 pollution from the northern mid-latitudes is not expected to reach the polar lower troposphere, but during the other three seasons (SON, DJF, MAM) the surface emissions in eO3srf collect at moderately high levels (~3 ppb) throughout the mid-latitude and polar troposphere (Figure <ref type="figure">A7</ref>). eO3srf has no direct stratospheric emissions, and so the LMS enhancement of ~2 ppb is driven by the tropospheric increases.</p><p>The O3 perturbations patterns for eO3ste1 and eO3ste2 (Figures <ref type="figure">A8-A9</ref>) are quite different in the stratosphere because of eO3ste1's much greater fraction of emissions directly into the stratosphere; however, their tropospheric patterns are quite similar because the net tropospheric emissions are almost identical as explained above. Focusing on the latitude-altitude patterns for eO3ste2 (Figure <ref type="figure">A9</ref>), it appears to be difficult in any season for the STE O3 flux to reach the surface in mid-latitudes. The main text simplest explanation is that this flux mostly enters the troposphere about the tropical jet stream and is transported first along isentropic surfaces into the subtropics where chemical loss of O3 remains high year-round.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.2.">Variability in O3 columns</head><p>The O3 column (DU) in these experiments is split into stratosphere and troposphere using the 5-day snapshots The southern hemisphere has a slightly larger build-up, probably because the northern hemisphere has greater pollution and more rapid O3 loss. The surface emissions eO3srf shows a clear peak column perturbation of ~2 DU over the source region near 38&#176;N, with equally large wintertime maxima extending to 90&#176;N. The direct aviation emissions eO3avi shows a similar pattern to eO3srf but with less variability since the source is more diffuse. Aviation NOx emissions eNOavi have a distinct seasonality because of the photochemical variability in the production of O3 from the NOx perturbation. eNOavi peaks in the summer and fall (as opposed to winter in eO3avi) with the maximum following the solar declination from 30&#176;N in winter to 45&#176;N in summer. Clearly eO3avi, even if scaled, is not a good surrogate for the impact of aviation on O3.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.3.">Burdens and lifetimes</head><p>The burden of excess tropospheric O3 in Tg divided by the 100 Tg-O3 yr -1 emissions defines the perturbation lifetime as given in Table <ref type="table">1</ref> and shown in Figure <ref type="figure">4</ref>. See also Figure <ref type="figure">A16</ref> for the total excess burden and Figure <ref type="figure">A17</ref> for separate plots of each experiment comparing tropospheric, stratospheric and total burden. For experiment eNOavi, which does not have direct O3 emissions, we cannot define a lifetime for the O3 perturbation, so ignore the right axis. Both STE experiments (eO3ste1 and eO3ste2) are surprisingly similar in terms of tropospheric burden; both have similar lifetimes (~25 days); and both show little seasonality. Aviation direct O3 (eO3avi) is the next largest burden, but it shows large seasonality, accumulating more in northern winter. The surface O3 (eO3srf) has the smallest burden and the largest seasonality in lifetime, from 6 days in summer to 21 days in winter. This sequence in lifetimes reflects the distance from emissions to photochemical sink, including surface deposition in these calculations. The sink in this case is the lower troposphere in the tropics or the summertime midlatitudes (see Figures 7 and 11 of <ref type="bibr">Prather et al., 2023)</ref>.</p><p>Excess O3 peaks in January for eO3avi and eO3srf because there is a lower loss rate in NH winter. Such seasonality is unrealistic for typical pollution sources such as urban or aviation because the production of O3 also drops substantially in winter. For eO3avi, the max:min (winter:summer) ratio of excess burden is 1.63, while for eNOavi, it is 1.22. The eNOavi excess burden is much less seasonal than that of eO3avi because the excess O3 produced from aviation NOx scales with O3 loss and overall photochemical activity. We expect similar results for urban pollution (eO3srf) but could not define a simple emission scenario to test this.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.4.">Chemical modes and timescales</head><p>The steady-state patterns of O3 perturbations are unique to each emission pattern (e.g. Figures <ref type="figure">3</ref>, <ref type="figure">A5-A9</ref>).</p><p>The eO3avi/srf/ste1 zonal mean latitude-by-altitude patterns for 1 July 2003 and 1 January 2004 are shown in Figure <ref type="figure">A19</ref>; and these are the initial patterns just before our decay experiment in which we stop emissions. The subsequent decay of the NH tropospheric burden of excess O3 is shown in Figure <ref type="figure">5</ref> (top), with the SH burden decay shown in Figure <ref type="figure">A18</ref>. All excess burdens are scaled to a value of 1 at the start of decay, and the y-axis is logarithmic so that constant decay rates are straight lines. Constant decay lines of 10, 20, 30 and 40 days (left to right) are shown to guide the eye. In NH summer, the burdens start to decay with e-fold timescales between 10 and 20 days; while in winter the initial rate is much slower, 30-40 days. In NH summer, rates slow down (become flatter) after two months as we enter the fall; while in winter, they speed up (become steeper) as we enter the spring.</p><p>The surface emission patterns (eO3srf) start to decay more rapidly than the upper tropospheric patterns (eO3avi and eO3ste1) because more excess O3 is near the surface where O3 loss is more rapid from both chemistry and surface deposition. After a month or so, they tend to follow more parallel decay rates because the remaining O3 is in a primary chemical mode with largest perturbations in the northern midlatitude upper troposphere. We can identify this primary O3 mode, as the zonal mean altitude-by-latitude color maps in Figures 5 (bottom) and A20. To calculate these modes, we drop the first month to allow short-term chemical modes to decay. These short-term modes will be primarily related to rapid transport of O3 from the emission zone to neighboring regions. We then take the perturbation for days 30, 35, &#8230;, and 85 (months 2-3), scale each day's perturbation to a NH tropospheric O3 perturbation of 5 Tg, and then average them. The patterns of excess O3 for eO3avi, eO3srf, and eO3ste1 are remarkably similar and indicate that we have found the primary O3 mode, at least for the mid-latitudes. The timescales here of 10-40 days are is similar to a range of intra-hemispheric transport and mixing scales, and there may be several overlapping modes in each hemisphere. We do not expect the emergence of a clean, single global mode as we found in similar experiments with N2O and CH4 <ref type="bibr">(Hsu and Prather, 2010;</ref><ref type="bibr">Prather and Hsu, 2010)</ref>.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.5.">Perturbations across other species</head><p>The emission-driven O3 increases perturb all of tropospheric chemistry. In Table <ref type="table">2</ref> we present a brief summary of the relative changes in the northern extra-tropics for key species and rates from eO3avi on 1 July 2003. We find that most perturbations maximize in the upper troposphere (200-600 hPa) vs the lower troposphere (600-1000 hPa): +5.6% vs. +3.5% for O3 and -3.5% vs. -3.1% for NOx. The NO depletion is larger than that of NOx and similar in both parts of the troposphere, about -5%, but still, NO2 is depleted. The OH and HO2 changes are more complex with HO2 increasing and OH decreasing aloft, while both increasing near the surface. From the OH increase in the lower troposphere, the global loss rate of CH4 and CO to OH reactions increases, but by &#8804; 0.1%.</p><p>The full latitude-by-altitude eO3avi patterns in % change for O3, NO, NO2, HNO3, PAN, CO, C2H6, C3H8, HOOH, CH3OOH, and HCHO are shown in Figure <ref type="figure">A21</ref>. The patterns here are consistent with the location of eO3avi emissions, but are also related to the O3 primary chemical mode (Figure <ref type="figure">A20</ref>). The O3 increase is large (3-5%) and extensive (35&#176;N-90&#176;N, 6-11 km), and NOx is reduced (1-3%) over a similar domain. The OH radicals (not shown) are reduced, and thus the VOCs (CO, C2H6, Alkane) increase by a fraction of 1%. The reduction in NOx drives increased peroxides (H2O2, CH3OOH, PAN). Formaldehyde (HCHO) shows small, plus-minus changes indicating that overall production of methyl radicals, a primary source of HCHO, is not changed. These patterns are probably similar for STE fluxes, but may not apply to surface O3 fluxes.</p><p>The general concept that NO2 is part of the OX family and that an increase in O3 would be accompanied by an increase in NO2 is not borne out with a perturbation to O3 in a full chemistry model</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.">Discussion and implications</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.1.">Lifetimes</head><p>With these direct O3 emission experiments, we are calculating a 'perturbation lifetime', i.e., the excess burden of tropospheric O3 divided by its emission rate. Lifetimes calculated here with the UCI CTM include chemical loss and surface (dry) deposition. Lifetimes vary seasonally, but fortunately with values &lt;30 days, a steady state is reached for each season. This steady-state condition is critical because then the product of the lifetime times the 3D steady-state pattern are equivalent to the integral of impacts over the decay of a single-pulse emission, see theorem in <ref type="bibr">Prather (2007)</ref>. Calculation of perturbation lifetimes for tropospheric O3 are rare (e.g., Figure <ref type="figure">11</ref> of <ref type="bibr">Hsu and Prather (2009)</ref> estimates the lifetime from the slope of the tropospheric O3 burden vs. the STE flux from a CTM experiment and gets 27-34 days). Most of the 'lifetimes' we have discussed here are actually the inverse of the tropospheric mean loss frequency for OX. Such lifetimes have no essential link to the chemical modes and timescales of the tropospheric O3 system, yet their values are similar to the perturbation lifetimes. Is that fortuitous? or is there some underlying physics relating them? There are clearly problems with the inverse-loss lifetimes: they are singular in value; and they do not readily include the chemical feedbacks of O3 on its production and loss. As a model metric for tropospheric O3 that has followed the development of CCMs and CTMs for over two decades, the lifetime derived from LOX remains an incredibly valuable diagnostic and its use should be continued with the same consistent definition (equation 4), but it should not be confused with a true lifetime or used for timescales.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.2.">STE and tagged tracers</head><p>An obvious application of this work is a more accurate attribution of the role of STE on tropospheric O3 and surface air quality. If we scale our eO3ste experiments to an observation-based STE flux of about 400 Tg-O3 yr -1 <ref type="bibr">(Murphy and Fahey, 1994;</ref><ref type="bibr">McLinden et al., 2000;</ref><ref type="bibr">Olsen et al., 2001;</ref><ref type="bibr">Ruiz and Prather, 2022)</ref>, then a lifetime of 24 days scales to 26 TgO3 or about 8% of the tropospheric burden. Even if we use the multi-model LOX-based lifetime range of 24-32 days <ref type="bibr">(Griffiths et al., 2021)</ref>, and correct them for O3 chemical feedbacks, we get similar results. So, what is wrong with the tagged tracer O3S that measures stratospheric influence at about 40%? <ref type="bibr">(Roelofs and Lelieveld, 1997;</ref><ref type="bibr">Williams et al., 2019;</ref><ref type="bibr">Abalos et al., 2020)</ref>. The O3S calculations use local values of fO3chem LOX as the loss frequency, and we know that this underestimates the loss by 20-40% because it fails to account for O3 chemical feedbacks, but this is only a small fraction of the difference. This factor-of-5 difference in stratospheric influence could be seen as simply definitional, but there are important implications for understanding future O3. A number of model studies have estimated STE flux increases of up to 150 Tg-O3 yr -1 over the 21 st century <ref type="bibr">(Hegglin and Shepherd, 2009;</ref><ref type="bibr">Meul et al., 2018;</ref><ref type="bibr">Abalos et al., 2020;</ref><ref type="bibr">Wang and Fu, 2023)</ref>. These models then exaggerate the resulting increase in tropospheric O3 attributable to this STE flux as being 15% (50 Tg-O3); whereas we would calculate that increase to be 3% (10 Tg-O3). Fortunately, the models are calculating the 'correct' overall tropospheric O3 change for their CCM under scenario RCP-8.5 because the tagged tracer O3S does not change the chemistry of O3. Nevertheless, the attribution to the increased STE O3 flux is misleading for policy use.</p><p>When we then try to attribute the O3 changes to specific factors using a tagged O3 tracer, we err. The fundamental problem is that O3 and O3S are interchangeable in terms of the chemistry and because O3 is a dominant species, a perturbation to O3S should be felt across all of tropospheric chemistry. Effectively, it increases the loss of the baseline O3 which is not included with the tagged tracer experiment. A parallel case can be easily seen with CH4. Assume that CH4. has global lifetime of 9 yr and a perturbation lifetime of 12 yr. We add a small amount (1 Tg) of tagged CH4 from riverine sources, CH4R. The perturbation is small (0.02%) and so the OH lifetime perturbation is also small (~0.006%). The tagged CH4R will thus decay with a 9 yr e-fold; however, we know that, and calculate that the overall 1 Tg perturbation to CH4 decays with a 12 yr e-fold. We can reconcile this conundrum by realizing that the perturbation caused by CH4R is small but it applies to the entire CH4 system, and thus it is increases in the non-tagged CH4 that makes the perturbation decay with a 12 yr e-fold. For O3 and O3S, the case is parallel but the chemical feedbacks are opposite: increased O3 leads to more rapid O3 loss and thus O3S causes more rapid loss of total O3 and its effective perturbation should decay more rapidly than the linear loss frequency used in O3S experiments. The decay of the influence of STE is accurately modeled with a perturbation experiment as here.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.3.">Other chemical perturbations</head><p>Our experiments with 100 Tg annual emissions of tropospheric O3 increase CH4 loss via OH by about 0.08% (eO3avi/srf) and 0.10% (eO3ste1/ste2). eO3avi/srf are slightly less effective because the impacts are mostly in NH mid-latitudes, while most of the CH4 is lost in the tropics favouring the STE fluxes of eO3ste1/ste2. Aviation NOx emissions that lead to a similar increase in O3 have a much larger impact on CH4 loss, +1.24%, because the NOx shifts HO2 into OH. Thus, we can attribute aviation's impact on tropospheric chemistry overall to the direct impact of NOx emissions rather than to the secondary buildup of an O3 perturbation, although the latter is a major component of aviation's climatic impact <ref type="bibr">(Lee et al., 2020)</ref>.</p><p>Comparing the build-up of O3 as a secondary pollutant from aviation NOx with that of the direct emissions, we find that the extra 0.85 Tg-N yr -1 from eNOavi produces 4.82 Tg excess O3 at steady state, which is 91% of eO3avi's perturbation and thus equivalent to 91 Tg-O3 yr -1 . Converting to moles, we calculate an annual-mean ozone production efficiency (OPE) of 31 moles of O3 produced per mole of NO emitted by aircraft, with a wintertime low of 24 on Jan 7 to a summertime high of 40 on Jul 1. This OPE estimate is only approximate because we use the perturbation lifetime from eO3avi to scale the eNOavi O3 perturbation into a flux (Tg yr -1 ). These values are consistent with OPE values for low-NOx conditions in the free troposphere found in a variety of locations <ref type="bibr">(Kleinman et al., 2002;</ref><ref type="bibr">Wild and Prather, 2006;</ref><ref type="bibr">Mazucca et al., 2016)</ref>, and provide a novel way of calculating OPE. Nevertheless, the concept of an OPE is mainly heuristic, the impact of aviation can only be assessed from the excess O3 calculated with an eNOavi experiment.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.4.">Odd oxygen and family chemistry</head><p>The long-standing effort of the atmospheric chemistry community to group species into families has been productive, but for tropospheric O3 this has reached new levels of complexity <ref type="bibr">(Bates and Jacob, 2019;</ref><ref type="bibr">Badia et al., 2021;</ref><ref type="bibr">Archibald et al., 2020)</ref>. A major goal in defining an OX family is to describe a covarying set of species (like an eigenvector or chemical mode) whose net chemical reactions in and out can be used to estimate a loss frequency (like an eigenvalue). Yet to date, these efforts in abstracting tropospheric chemistry have not been able to address the nature of the chemical feedbacks. More complex definitions of odd oxygen have led to large increases in its lifetime that are simply not found in O3 perturbation experiments. Further, a staple in the OX family has always been NO2, but we find that tropospheric O3 perturbations are linked with decreases in NO2, so that the family definition does not represent a fundamental chemical mode of the troposphere. This results was somewhat surprising and disappointing because OX = O3 + O is one of the chemical modes for Chapman chemistry in the stratosphere.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.5.">Remaining issues</head><p>How robust are the results here? We suspect they are within the 20% range that describes most of the differences across models (e.g., <ref type="bibr">Stevenson et al., 2013;</ref><ref type="bibr">Young et al., 2018;</ref><ref type="bibr">Griffiths et al., 2021)</ref>, including the UCI CTM. The results here do not depend on cancelling effects, and the chemical perturbations and feedbacks driven by O3 changes are straightforward and easy to assess.</p><p>Seasonality is a core element of the tropospheric O3 budget, both production and loss, as found in the seasonality of the four Atom deployments <ref type="bibr">(Prather et al., 2023)</ref>. Fortunately, the O3 timescales are much less than one season, a near steady state is reached within 1-2 months, and so one must consider separately the seasonal cycles in O3 production or STE flux. For example, the wintertime accumulation of direct surface emissions (eO3srf) fills the NH extratropical troposphere because O3 loss is suppressed during NH winter. That pattern of excess O3 is likely correct but the magnitude is exaggerated because surface production of secondary O3 pollution drops off outside of JJA. In the case of aviation, we directly diagnose a reduction in wintertime O3 production with experiment eNOavi, finding the accumulation of excess O3 to be seasonally flat. Experiments like these, with simplified direct emissions, can be used in global chemistry models to diagnose the seasonal response of tropospheric O3 perturbations to combined chemistry and transport. Direct perturbation experiments, either emission or pulse, also avoid the foibles of tagged tracers with incorrectly linearized chemistry, and they provide a more accurate assessment that includes full chemical feedbacks.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Figures &amp; Tables</head><p>Table 1. CTM experiments run emissions notes CTRL Control run eO3avi (EO3A) +100 Tg-O3 yr -1 Aviation: NO emission pattern, RCP6.0 y2000 eNOavi (EO3B) +0.85 Tg-N yr -1 (2xAviation NOx) Aviation: NO emission pattern, RCP6.0 y2000 eO3srf (EO3S) +100 Tg-O3 yr -1 Surface: 34&#176;N-40&#176;N; 110&#176;E-140&#176;E; 0-2 km eO3ste1 (EO3T) +100 Tg-O3 yr -1 STE: 25&#176;S-35&#176;S &amp; 27&#176;N-37&#176;N; 11.0-12.2 km eO3ste2 (EO3U) +100 Tg-O3 yr -1 STE: 15&#176;S-25&#176;S &amp; 15&#176;N-25&#176;N; 11.0-12.2 km CTRL: O3 budget P-O3 L-O3 P-L (O3) DD-O3 Residual (STE) L-OX mean loss frequency Tg-O3 yr -1 23,963 23,695 269 628 359 4,656 (23.8 days) -1 perturbation O3 burden (Tg-O3) perturbation O3 lifetime (days) run troposphere stratosphere troposphere CTRL 345 3,045 na eO3avi 5.32 (4.28 -6.98) 1.66 (0.63 -2.70) 19 (16 -25) eNOavi 4.82 (4.14 -5.24) 0.34 (0.22 -0.45) not defined eO3srf 3.46 (1.59 -5.77) 0.16 (0.10 -0.25) 13 (6 -21) eO3ste1 6.84 (6.35 -7.49) 3.59 (2.51 -4.73) 25 (23 -27) eO3ste2 6.44 (6.09 -7.00) 0.98 (0.69 -1.39) 24 (22 -26)</p><p>Notes: All UCI CTM results are averaged over three years <ref type="bibr">(2001)</ref><ref type="bibr">(2002)</ref><ref type="bibr">(2003)</ref>. The O3 budget for CTRL is similar to other models for present day <ref type="bibr">(1995)</ref><ref type="bibr">(1996)</ref><ref type="bibr">(1997)</ref><ref type="bibr">(1998)</ref><ref type="bibr">(1999)</ref><ref type="bibr">(2000)</ref><ref type="bibr">(2001)</ref><ref type="bibr">(2002)</ref><ref type="bibr">(2003)</ref><ref type="bibr">(2004)</ref> in Table <ref type="table">1</ref> of <ref type="bibr">Griffiths et al. (2021)</ref> and Figure <ref type="figure">3</ref> of <ref type="bibr">Young et al. (2018)</ref>. Note that P (L) of O3 are derived from the positive (negative) terms in Equation <ref type="formula">1</ref>, so that P-L is the true d[O3]/dt|chem of <ref type="bibr">Archibald et al. (2020)</ref>. L-OX is taken from Equation <ref type="formula">4</ref>and can be directly compared with 'L' in these MIP tables. The mean loss frequency is calculated as the burden (345 Tg) divided by the sum of dry deposition (628 Tg yr -1 ) plus L-OX (4656 Tg yr -1 ). Burden (Tg-O3) and lifetime (days) for the eO3xxx experiments are shown as: mean (min -max). Perturbation lifetime assumes that effectively all emissions (100 Tg-O3 yr -1 ) are going into the troposphere, even if some originates in the stratosphere. Shorthand notation for files and some legends is shown in 'EO3X' format.</p><p>Table 2. Perturbation to key species as % in mass of CTRL for NH extra-tropics eO3avi on 1 July 2003 pressure range O3 HO2 OH a NOx NO 200-600 hPa +5.6% +1.3% -0.3% -3.5% -4.8% 600-1000 hPa +3.5% +0.3% +0.6% -3.1% -5.5% Notes: Global    For methodology, see Figure <ref type="figure">1</ref>. Aviation emissions eO3avi occur mostly in the northern troposphere but reach into the stratosphere and southern hemisphere. Surface emissions eO3srf occur within the black square over a limited longitude range, see Table <ref type="table">1</ref>. Note that color bars have the same range on all plots.  </p></div></body>
		</text>
</TEI>
