skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Functional genomics and co‐occurrence in a diverse tropical tree genus: The roles of drought‐ and defence‐related genes
Abstract Tropical tree communities are among the most diverse in the world. A small number of genera often disproportionately contribute to this diversity. How so many species from a single genus can co‐occur represents a major outstanding question in biology. Niche differences are likely to play a major role in promoting congeneric diversity, but the mechanisms of interest are often not well‐characterized by the set of functional traits generally measured by ecologists.To address this knowledge gap, we used a functional genomic approach to investigate the mechanisms of co‐occurrence in the hyper‐diverse genusFicus. Our study focused on over 800 genes related to drought and defence, providing detailed information on how these genes may contribute to the diversity ofFicusspecies.We find widespread and consistent evidence of the importance of defence gene dissimilarity in co‐occurring species, providing genetic support for what would be expected under the Janzen‐Connell mechanism. We also find that drought‐related gene sequence similarity is related toFicusco‐occurrence, indicating that similar responses to drought promote co‐occurrence.Synthesis. We provide the first detailed functional genomic evidence of how drought‐ and defence‐related genes simultaneously contribute to the local co‐occurrence in a hyper‐diverse genus. Our results demonstrate the potential of community transcriptomics to identify the drivers of species co‐occurrence in hyper‐diverse tropical tree genera.  more » « less
Award ID(s):
2124466
PAR ID:
10571334
Author(s) / Creator(s):
; ; ; ; ;
Publisher / Repository:
Wiley
Date Published:
Journal Name:
Journal of Ecology
Volume:
112
Issue:
3
ISSN:
0022-0477
Page Range / eLocation ID:
575 to 589
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract Enhancing tree diversity may be important to fostering resilience to drought‐related climate extremes. So far, little attention has been given to whether tree diversity can increase the survival of trees and reduce its variability in young forest plantations.We conducted an analysis of seedling and sapling survival from 34 globally distributed tree diversity experiments (363,167 trees, 168 species, 3744 plots, 7 biomes) to answer two questions: (1) Do drought and tree diversity alter the mean and variability in plot‐level tree survival, with higher and less variable survival as diversity increases? and (2) Do species that survive poorly in monocultures survive better in mixtures and do specific functional traits explain monoculture survival?Tree species richness reduced variability in plot‐level survival, while functional diversity (Rao's Q entropy) increased survival and also reduced its variability. Importantly, the reduction in survival variability became stronger as drought severity increased. We found that species with low survival in monocultures survived comparatively better in mixtures when under drought. Species survival in monoculture was positively associated with drought resistance (indicated by hydraulic traits such as turgor loss point), plant height and conservative resource‐acquisition traits (e.g. low leaf nitrogen concentration and small leaf size).Synthesis.The findings highlight: (1) The effectiveness of tree diversity for decreasing the variability in seedling and sapling survival under drought; and (2) the importance of drought resistance and associated traits to explain altered tree species survival in response to tree diversity and drought. From an ecological perspective, we recommend mixing be considered to stabilize tree survival, particularly when functionally diverse forests with drought‐resistant species also promote high survival of drought‐sensitive species. 
    more » « less
  2. Abstract Ectomycorrhizal (EM) effects on forest ecosystem carbon (C) and nitrogen (N) cycling are highly variable, which may be due to underappreciated functional differences among EM‐associating trees. We hypothesise that differences in functional traits among EM tree genera will correspond to differences in soil organic matter (SOM) dynamics.We explored how differences among three genera of angiosperm EM trees (Quercus,Carya, andTilia) in functional traits associated with leaf litter quality, resource use and allocation patterns, and microbiome assembly related to overall soil biogeochemical properties.We found consistent differences among EM tree genera in functional traits.Quercustrees had lower litter quality, lower δ13C in SOM, higher δ15N in leaf tissues, greater oxidative extracellular enzyme activities, and higher EM fungal diversity thanTiliatrees, whileCaryatrees were often intermediary. These functional traits corresponded to overall SOM‐C and N dynamics and soil fungal and bacterial community composition.Our findings suggest that trait variation among EM‐associating tree species should be an important consideration in assessing plant–soil relationships such that EM trees cannot be categorised as a unified functional guild. Read the freePlain Language Summaryfor this article on the Journal blog. 
    more » « less
  3. Abstract We introduce a new “ecosystem‐scale” experiment at the Cedar Creek Ecosystem Science Reserve in central Minnesota, USA to test long‐term ecosystem consequences of tree diversity and composition. The experiment—the largest of its kind in North America—was designed to provide guidance on forest restoration efforts that will advance carbon sequestration goals and contribute to biodiversity conservation and sustainability.The new Forest and Biodiversity (FAB2) experiment uses native tree species in varying levels of species richness, phylogenetic diversity and functional diversity planted in 100 m2and 400 m2plots at 1 m spacing, appropriate for testing long‐term ecosystem consequences. FAB2 was designed and established in conjunction with a prior experiment (FAB1) in which the same set of 12 species was planted in 16 m2plots at 0.5 m spacing. Both are adjacent to the BioDIV prairie‐grassland diversity experiment, enabling comparative investigations of diversity and ecosystem function relationships between experimental grasslands and forests at different planting densities and plot sizes.Within the first 6 years, mortality in 400 m2monoculture plots was higher than in 100 m2plots. The highest mortality occurred inTilia americanaandAcer negundomonocultures, but mortality for both species decreased with increasing plot diversity. These results demonstrate the importance of forest diversity in reducing mortality in some species and point to potential mechanisms, including light and drought stress, that cause tree mortality in vulnerable monocultures. The experiment highlights challenges to maintaining monoculture and low‐diversity treatments in tree mixture experiments of large extent.FAB2 provides a long‐term platform to test the mechanisms and processes that contribute to forest stability and ecosystem productivity in changing environments. Its ecosystem‐scale design, and accompanying R package, are designed to discern species and lineage effects and multiple dimensions of diversity to inform restoration of ecosystem functions and services from forests. It also provides a platform for improving remote sensing approaches, including Uncrewed Aerial Vehicles (UAVs) equipped with LiDAR, multispectral and hyperspectral sensors, to complement ground‐based monitoring. We aim for the experiment to contribute to international efforts to monitor and manage forests in the face of global change. 
    more » « less
  4. Summary White oak (Quercus alba) is an abundant forest tree species across eastern North America that is ecologically, culturally, and economically important.We report the first haplotype‐resolved chromosome‐scale genome assembly ofQ. albaand conduct comparative analyses of genome structure and gene content against other published Fagaceae genomes. We investigate the genetic diversity of this widespread species and the phylogenetic relationships among oaks using whole genome data.Despite strongly conserved chromosome synteny and genome size acrossQuercus, certain gene families have undergone rapid changes in size, including defense genes. Unbiased annotation of resistance (R) genes across oaks revealed that the overall number of R genes is similar across species – as are the chromosomal locations of R gene clusters – but, gene number within clusters is more labile. We found thatQ. albahas high genetic diversity, much of which predates its divergence from other oaks and likely impacts divergence time estimations. Our phylogenetic results highlight widespread phylogenetic discordance across the genus.The white oak genome represents a major new resource for studying genome diversity and evolution inQuercus. Additionally, we show that unbiased gene annotation is key to accurately assessing R gene evolution inQuercus. 
    more » « less
  5. Abstract Whether wild herbivores confer biotic resistance to invasion by exotic plants remains a key question in ecology. There is evidence that wild herbivores can impede invasion by exotic plants, but it is unclear whether and how this generalises across ecosystems with varying wild herbivore diversity and functional groups of plants, particularly over long‐term (decadal) time frames.Using data from three long‐term (13‐ to 26‐year) exclosure experiments in central Kenya, we tested the effects of wild herbivores on the density of exotic invasive cacti,Opuntia strictaandO. ficus‐indica(collectively,Opuntia), which are among the worst invasive species globally. We also examined relationships between wild herbivore richness and elephant occurrence probability with the probability ofO. strictapresence at the landscape level (6150 km2).Opuntiadensities were 74% to 99% lower in almost all plots accessible to wild herbivores compared to exclosure plots.Opuntiadensities also increased more rapidly across time in plots excluding wild herbivores. These effects were largely driven by megaherbivores (≥1000 kg), particularly elephants.At the landscape level, modelledOpuntia strictaoccurrence probability was negatively correlated with estimated species richness of wild herbivores and elephant occurrence probability. On average,O. strictaoccurrence probability fell from ~0.56 to ~0.45 as wild herbivore richness increased from 6 to 10 species and fell from ~0.57 to ~0.40 as elephant occurrence probability increased from ~0.41 to ~0.84. These multi‐scale results suggest that any facilitative effects ofOpuntiaby wild herbivores (e.g. seed/vegetative dispersal) are overridden by suppression (e.g. consumption, uprooting, trampling).Synthesis. Our experimental and observational findings that wild herbivores confer resistance to invasion by exotic cacti add to evidence that conserving and restoring native herbivore assemblages (particularly megaherbivores) can increase community resistance to plant invasions. 
    more » « less