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Abstract Increased temperatures in Arctic tundra ecosystems are leading to higher microbial respiration rates of soil organic matter, resulting in the release of carbon dioxide and methane. To understand the effects of this microbial activity, it is important to better characterize the diverse microbial communities in Arctic soil. Our goal is to refine our understanding of the phylogenetic diversity ofTerriglobia, a common but elusive group within theAcidobacteriotaphylum. This will help us link this diversity to variations in carbon and nitrogen usage patterns. We used long‐read Oxford Nanopore MinION sequences in combination with metagenomic short‐read sequences to assemble completeAcidobacteriotagenomes. This allowed us to build multi‐locus phylogenies and annotate pangenome markers to distinguishAcidobacteriotastrains from several tundra soil isolates. We identified a phylogenetic cluster containing four new species previously associated withEdaphobacter lichenicola. We conclude that this cluster represents a new genus, which we have namedTunturibacter. We describe four new species:Tunturibacter lichenicolacomb. nov.,Tunturibacter empetritectussp. nov.,Tunturibacter gelidoferenssp. nov., andTunturibacter psychrotoleranssp. nov. By uncovering new species and strains within theTerriglobiaand improving the accuracy of their phylogenetic placements, we hope to enhance our understanding of this complex phylum and shed light on the mechanisms that shape microbial communities in polar soils.
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Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
Abstract As Arctic soil ecosystems warm due to climate change, enhanced microbial activity is projected to increase the rate of soil organic matter degradation. Delineating the diversity and activity of Arctic tundra microbial communities active in decomposition is thus of keen interest. Here, we describe novel cold-adapted bacteria in the genus Mucilaginibacter (Bacteroidota) isolated from Artic tundra soils in Finland. These isolates are aerobic chemoorganotrophs and appear well adapted to the low-temperature environment, where they are also exposed to desiccation and a wide regime of annual temperature variation. Initial 16S ribosomal RNA (rRNA)-based phylogenetic analysis suggested that five isolated strains represent new species of the genus Mucilaginibacter, confirmed by whole genome-based phylogenomic and average nucleotide identity. Five novel species are described: Mucilaginibacter geliditolerans sp. nov., Mucilaginibacter tundrae sp. nov., Mucilaginibacter empetricola sp. nov., Mucilaginibacter saanensis sp. nov., and Mucilaginibacter cryoferens sp. nov. Genome and phenotype analysis showed their potential in complex carbon degradation, nitrogen assimilation, polyphenol degradation, and adaptation to their tundra heath habitat. A pangenome analysis of the newly identified species alongside known members of the Mucilaginibacter genus sourced from various environments revealed the distinctive characteristics of the tundra strains. These strains possess unique genes related to energy production, nitrogen uptake, adaptation, and the synthesis of secondary metabolites that aid in their growth, potentially accounting for their prevalence in tundra soil. By uncovering novel species and strains within the Mucilaginibacter, we enhance our understanding of this genus and elucidate how environmental fluctuations shape the microbial functionality and interactions in Arctic tundra ecosystems.
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- Award ID(s):
- 2129351
- PAR ID:
- 10590158
- Publisher / Repository:
- Oxford University Press
- Date Published:
- Journal Name:
- ISME Communications
- Volume:
- 5
- Issue:
- 1
- ISSN:
- 2730-6151
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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