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			<titleStmt><title level='a'>Effects of Soil Moisture Heterogeneity on Temperature‐Humidity Dissimilarity in the Convective Boundary Layer</title></titleStmt>
			<publicationStmt>
				<publisher>Wiley</publisher>
				<date>06/28/2025</date>
			</publicationStmt>
			<sourceDesc>
				<bibl> 
					<idno type="par_id">10618311</idno>
					<idno type="doi">10.1029/2025JD043698</idno>
					<title level='j'>Journal of Geophysical Research: Atmospheres</title>
<idno>2169-897X</idno>
<biblScope unit="volume">130</biblScope>
<biblScope unit="issue">12</biblScope>					

					<author>Cheng Liu</author><author>Heping Liu</author><author>Jianping Huang</author><author>Xiaozhen Fang</author><author>Ren‐Guo Zhu</author><author>Wei Guo</author><author>YuanYuan Pan</author>
				</bibl>
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		<profileDesc>
			<abstract><ab><![CDATA[<title>Abstract</title> <p>Surface moisture heterogeneity degrades temperature‐humidity (‐) similarity in the atmospheric surface layer, yet the underlying physical mechanisms driving this dissimilarity remain underexplored. This study employs large‐eddy simulations coupled with a land‐surface model to investigate ‐ similarity in the convective boundary layer (CBL) over surfaces with varying scales of surface moisture heterogeneity. Results reveal that as the heterogeneity scale increases, patch‐scale thermally induced circulations develop and interact with cellular turbulent organized structures, significantly altering scalar transport and turbulence dynamics. The patch‐scale thermally induced circulations enhance horizontal advection, modify the production and transport of scalar variances, and lead to a disproportionate increase in the standard deviations of temperature () and humidity (), accompanied by a reduction in ‐ covariance (). As a result, ‐ similarity is substantially reduced throughout the CBL. Spectral analysis reveals that ‐ dissimilarity is most strongly influenced by turbulent motions at scales corresponding to patch lengths. The findings offer insights into the role of surface heterogeneity in shaping scalar similarity in the CBL, with implications for land‐atmosphere interactions and parameterization in numerical models.</p>]]></ab></abstract>
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<div xmlns="http://www.tei-c.org/ns/1.0"><head n="1.">Introduction</head><p>It is widely recognized that the exchange of scalars such as heat, water vapor, and CO 2 across the land-atmosphere interface is of significance to numerous applications. These scalar fluxes are typically measured by eddy covariance (EC) systems in the atmospheric surface layer (ASL) and are presumed to represent the true fluxes across the land-atmosphere interface <ref type="bibr">(Butterworth et al., 2021)</ref>. This approach relies on the so-called constant flux layer assumption (hereafter the CFLA) that also forms the basis of Monin-Obukhov similarity theory (MOST) <ref type="bibr">(Stull, 1988;</ref><ref type="bibr">Wyngaard, 2010)</ref>. However, the widely reported non-closure of the surface energy balance (hereafter non-closure) suggests that sensible (SH) and latent (LH) heat fluxes measured by EC systems in the ASL may be underestimated, or in some cases, overestimated compared to the respective true fluxes exchanged at the land-atmosphere interface <ref type="bibr">(Gao et al., 2018;</ref><ref type="bibr">Mauder et al., 2020;</ref><ref type="bibr">Oncley et al., 2007;</ref><ref type="bibr">Stoy et al., 2013)</ref>. Increasing evidence from EC data and large eddy simulations (LES) points to large turbulent eddies associated with boundary-layer processes as a major cause of the non-closure <ref type="bibr">(Foken et al., 2011;</ref><ref type="bibr">Gao et al., 2017;</ref><ref type="bibr">H. Liu, Gao, &amp; Katul, 2021;</ref><ref type="bibr">Liu, Liu, Huang, et al., 2024;</ref><ref type="bibr">Wanner et al., 2024)</ref>. The extent to which changes in boundary-layer processes regulate the influence of large turbulent eddies on scalar fluxes and their profiles as well as turbulence statistics in the unstable ASL is now receiving increased interest and scrutiny <ref type="bibr">(Cava et al., 2006;</ref><ref type="bibr">Cancelli et al., 2014;</ref><ref type="bibr">D. Li et al., 2018;</ref><ref type="bibr">Q. Li et al., 2018;</ref><ref type="bibr">C. Liu, Liu, et al., 2021;</ref><ref type="bibr">H. Liu, Gao, &amp; Katul, 2021;</ref><ref type="bibr">Liu, Liu, Huang, et al., 2024)</ref>.</p><p>At the surface, energy balance and plant related processes govern heat, water vapor, and CO 2 fluxes, but at the top of the boundary layer, these fluxes follow different rules and constraints. In the convective boundary layer (CBL), buoyancy-driven large turbulent eddies, termed as ejections, rise from the surface, overshoot the capping inversion, and cause the entrainment of stably stratified air from the free atmosphere into the boundary layer as descending large eddies, or sweeps <ref type="bibr">(Conzemius &amp; Fedorovich, 2006;</ref><ref type="bibr">Stull, 1988;</ref><ref type="bibr">Wyngaard, 1982)</ref>. These topdown large eddies with entrained air masses can travel across the CBL and impinge into the ASL, as indicated by observed negative skewness profiles of a trace gas <ref type="bibr">(Lanotte &amp; Mazzitelli, 2013)</ref>. These top-down processes through sweeps affect momentum and scalar fluxes in the ASL <ref type="bibr">(Katul et al., 1997)</ref>, causing deviations of turbulence statistics from their classic MOST scaling <ref type="bibr">(Khanna &amp; Brasseur, 1997;</ref><ref type="bibr">Q. Li et al., 2018;</ref><ref type="bibr">Wyngaard, 1982)</ref>. Moreover, they cause breakdown in gradient-diffusion closure relations <ref type="bibr">(Ghannam et al., 2017)</ref>, the ASL temperature-humidity dissimilarity <ref type="bibr">(Cancelli et al., 2014;</ref><ref type="bibr">Gao et al., 2018;</ref><ref type="bibr">C. Liu, Liu, et al., 2021)</ref>, increased flux divergence and convergence <ref type="bibr">(Gao et al., 2016)</ref>, and decreased flux transport efficiencies for water vapor and CO 2 <ref type="bibr">(Liu, Liu, Huang, et al., 2024)</ref>. Flux divergence and convergence, observed by turbulent flux measurements <ref type="bibr">(Gao et al., 2016;</ref><ref type="bibr">Mahrt et al., 2021;</ref><ref type="bibr">Ortiz-Suslow et al., 2021)</ref>, indicate that fluxes measured in the ASL can be biased compared to the true surface interfacial fluxes depending on the interplay between the entrainment processes and the ability of large eddies to propagate these entrainment effects into the ASL.</p><p>Vertical transport of scalars at any level z from the ground surface can be treated as a superposition of bottom-up processes from the surface and top-down processes from the entrainment zone, resulting in a linear heightdependence of scalar fluxes or changes in slopes of flux profiles <ref type="bibr">(Sorbjan, 1999;</ref><ref type="bibr">Wyngaard, 1990;</ref><ref type="bibr">Wyngaard &amp; Brost, 1984)</ref>. Changes in the slopes of flux profiles in the CBL (i.e., changes in flux divergence and convergence) are also linked to variations in asymmetric contributions between top-down entrainment fluxes and bottom-up surface interfacial fluxes of the corresponding scalars <ref type="bibr">(Liu, Liu, Huang, et al., 2024)</ref>. While these previous studies focused on how changes in bottom-up processes affect ASL flux divergence and convergence through altering the surface Bowen ratio (e.g., <ref type="bibr">Liu, Liu, Huang, et al., 2024)</ref>, the influence of changes in top-down processes on flux divergence and convergence in the ASL remains less explored and frames the scope here.</p><p>Entrainment-induced fluxes into the boundary layer can act as a source or sink of scalars, depending on the scalar increment across the capping inversion <ref type="bibr">(Lanotte &amp; Mazzitelli, 2013)</ref>. However, what has been less explored is how changes in the mean temperature gradient across the entrainment (EZTG) zone (EZTG) modify bottom-up buoyancy-driven boundary layer growth into the capping inversion. This in turn alters entrainment-induced topdown fluxes and the asymmetric flux transport by sweeps and ejections, leading to changes in the slopes of scalar flux profiles. Additionally, the implications of these changes in the slopes for the validity of the CFLA and how this assumption's failure contributes to the non-closure issue is incomplete and requires further investigation.</p><p>To address these questions, a series of LES experiments are conducted for horizontally homogeneous, quasistationary flows in the CBL with three different temperature gradient values across the entrainment zone. The model domain is flat and covered with uniform short grass under three varying soil moisture conditions. This study specifically targets CBL flows due to the observed increase in the non-closure under conditions of increasing instability in the CBL <ref type="bibr">(Stoy et al., 2013;</ref><ref type="bibr">H. Liu, Gao, &amp; Katul, 2021;</ref><ref type="bibr">Zhou et al., 2018)</ref>. Here, the nonclosure is assessed by the closure ratio. As outlined in <ref type="bibr">Liu, Liu, Huang, et al. (2024)</ref>, non-closure manifests when the closure ratio, defined as CR = SH + LH SH 0 + LH 0 , deviates from unity. Here (SH + LH) represents the sum of the measured SH and LH at any height in the ASL, as reported by EC systems, while (SH 0 + LH 0 ) is the sum of their "true" surface fluxes, balanced by the surface available energy (i.e., SH 0 + LH 0 = Rn 0 -G 0 , where Rn 0 is the surface net radiation and G 0 is the ground heat flux).</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Geophysical Research Letters</head><p>10.1029/2024GL112619</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="2.">LES Model and Configurations</head><p>The National Center for Atmospheric Research LES model <ref type="bibr">(Moeng, 1984;</ref><ref type="bibr">Patton et al., 2005;</ref><ref type="bibr">Sullivan et al., 1996)</ref>, coupled with a land-surface model (LSM) <ref type="bibr">(Huang et al., 2009)</ref>, is employed to address the study objectives. The LSM provides surface fluxes of sensible and latent heat and CO 2 , consistent with previous studies (e.g., <ref type="bibr">Huang et al., 2009;</ref><ref type="bibr">Liu, Liu, Huang, et al., 2024)</ref>. The LSM computes surface sensible and latent heat fluxes in a manner that guarantees surface energy-balance closure. The governing equations and main features of the LES model are detailed in <ref type="bibr">Moeng (1984)</ref>. The simulation domain is 5.0 &#215; 5.0 &#215; 1.92 km with a grid spacing of 10 &#215; 10 &#215; 4 m resulting in 500 &#215; 500 &#215; 480 grid points in the x (longitudinal), y (lateral), and z (vertical) directions, respectively. This setup, similar to C. <ref type="bibr">Liu, Liu, et al. (2021)</ref>, is sufficient to resolve key turbulence features in the CBL (e.g., C. <ref type="bibr">Liu, Liu, et al., 2021;</ref><ref type="bibr">Liu, Liu, Huang, et al., 2024)</ref>. The ground is represented by grassland with a momentum roughness length of 0.1 m and an albedo of 0.2.</p><p>To evaluate the effects of varying entrainment fluxes on scalar transport in the ASL, three sets of simulations are performed with three temperature gradient values of 0.05, 0.1, and 0.2 K/m across the entrainment zone. These three temperature gradient regimes represent weak (EZweak), moderate (EZmoderate), and strong EZTG (EZstrong) conditions (Table <ref type="table">S1</ref> in Supporting Information S1). These choices are typical of atmospheric conditions (e.g., <ref type="bibr">Sorbjan, 2005)</ref>. Additionally, simulations are run for three soil moisture conditions as measured by a soil saturation factor (f n ): dry ( f n = 0.05), moderate dry ( f n = 0.3), and wet ( f n = 0.9) soils, resulting in nine cases (Table <ref type="table">S1</ref> in Supporting Information S1). A constant incident solar radiation of 700 W m -2 is prescribed, and geostrophic wind forcing is assumed to be zero, representing a shear-free CBL.</p><p>The initial profiles of potential temperature (&#952;), specific humidity (q), and CO 2 mixing ratio (C) are provided in Figures <ref type="figure">1a</ref>, <ref type="figure">1b</ref>, and 1c. Specifically, &#952; is constant at 290 K within the mixed layer of height z i with a gradient of 0.006 K m -1 in the free atmosphere, and three varying gradients in the entrainment zone. The q profile is constant at 8 g kg -1 in the mixed layer, decreases at -0.175 g kg -1 m -1 in the interfacial layer, and remains constant at 1 g kg -1 in the free atmosphere. The C profile has a constant value of 531 mg kg -1 within the mixed layer, a positive gradient of 0.75 mg kg -1 m -1 in the interfacial layer, and a constant value of 561 mg kg -1 above it similar to <ref type="bibr">Huang et al. (2009)</ref>. Each simulation's timestep is dynamically adjusted to satisfy the Courant, Friedrichs, and Lewy conditions. Idealized horizontal periodic boundary conditions are applied throughout the simulations. Sensitivity tests confirm that the results are not influenced by variations in domain height, domain size, or horizontal grid spacing (Figures <ref type="figure">S1</ref>, <ref type="figure">S2</ref>, and S3 in Supporting Information S1). The LES analysis is based on 1 hr averages after the domain-averaged turbulence kinetic energy reaches a stationary state (Figure <ref type="figure">S4</ref> in Supporting Information S1). The 1 hr averages ensure multiple eddy turn-over time to be interrogated in turbulent flux calculations.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.">Results and Discussion</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.1.">EZTG-Induced Changes in Entrainment Fluxes Under Three Soil Moisture Conditions</head><p>Figures 1d, 1e, and 1f present normalized fluxes of kinematic sensible heat (w&#697;&#952;&#697; / w&#697;&#952;&#697; 0 ) , water vapor (w&#697;q&#697; / w&#697;q&#697; 0 ) , and CO 2 (w&#697;C&#697; / w&#697;C&#697; 0 ) for the three EZTG settings across the three soil moisture conditions. These fluxes are domain-averaged horizontally after time-averaging at each grid point. Under the three EZTG conditions, w&#697;&#952;&#697; / w&#697;&#952;&#697; 0 always decreases linearly with z z i across the three soil moisture conditions (i.e., flux divergence) (Figure <ref type="figure">1d</ref>). However, w&#697;q&#697; / w&#697;q&#697; 0 shows a linear decrease with z z i for EZstrong-M and EZstrong-W (i.e., flux divergence) but a linear increase with z z i (i.e., flux convergence) for other cases (Figure <ref type="figure">1e</ref>). Most cases exhibit a linear decrease in w&#697;C&#697; / w&#697;C&#697; 0 with z z i (i.e., flux divergence), except EZweak-D, EZmoderate-D, and EZweak-M, which show flux convergence (Figure <ref type="figure">1f</ref>). These linear dependences for w&#697;&#952;&#697; / w&#697;&#952;&#697; 0 , w&#697;q&#697; / w&#697;q&#697; 0 , and w&#697;C&#697; / w&#697;C&#697; 0 on z z i have been reported elsewhere <ref type="bibr">(Andre et al., 1978;</ref><ref type="bibr">Ek &amp; Holtslag, 2004;</ref><ref type="bibr">Ghannam et al., 2017;</ref><ref type="bibr">Huang et al., 2008</ref><ref type="bibr">Huang et al., , 2009</ref><ref type="bibr">Huang et al., , 2011;;</ref><ref type="bibr">Lanotte &amp; Mazzitelli, 2013;</ref><ref type="bibr">Liu, Liu, Huang, et al., 2024;</ref><ref type="bibr">Mellado et al., 2017;</ref><ref type="bibr">Stull, 1988)</ref>. To explain this linearity, the mean conservation equation for an arbitrary scalar s at high Reynolds number is considered, where molecular diffusion is negligible compared to turbulent transport, under horizontally homogeneous conditions and with no subsidence. This yields: </p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Geophysical Research Letters</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>&#8706;S</head><p>where t is time, S is the mean scalar concentration, w&#697;s&#697; is the vertical turbulent flux, and z is, as before, the vertical coordinate. Differentiating with respect to z gives:</p><p>In the CBL, assuming a well-mixed mean scalar concentration (i.e., &#8706;S &#8706;z = 0), and integrating twice with respect to z gives <ref type="bibr">(Huang et al., 2008;</ref><ref type="bibr">Sorbjan, 1999;</ref><ref type="bibr">Wyngaard &amp; Brost, 1984)</ref>:</p><p>where &#945; = w&#697;s&#697; z i w&#697;s&#697; o is the entrainment ratio, w&#697;s&#697; o is the "true" surface flux, and w&#697;s&#697; z i is the flux at the boundary layer top z i impacted by entrainment. In the ASL, it is commonly assumed that z z i &#8810; 1. This assumption is the essence of MOST that argues turbulent fluxes at any z closely approximate the true ground fluxes near the ground. However, there are cases where z z i &#8764; 0.1 and &#945; exceeds two causing significant deviations between the ASL turbulent flux and surface flux. This situation becomes significantly amplified and problematic when &#945; &lt; 0. Linear dependence of w&#697;s&#697;(z) on z occurs when the "storage term" at any z (i.e., &#8706;S &#8706;t ) is retained. It is the well-mixed condition that eliminates its contribution from the mean scalar continuity equation upon vertical differentiation.</p><p>Returning to the entrainment fluxes, a model for the entrainment of heat or scalar fluxes at z = z i is given by F i = -&#956;w e (&#8710; EZ s), where &#8710; EZ s is the EZTG or passive scalar increment across the entrainment zone, w e is the entrainment velocity <ref type="bibr">(Lanotte &amp; Mazzitelli, 2013)</ref>, and &#956; is an empirical constant. The w e is assumed to be proportional to the convective velocity w * = ( gz i H 0 &#952; 0 )</p><p>and the inverse bulk Richardson number</p><p>. This assumption implies that in a shear-free CBL, turbulent processes in the entrainment zone are directly related to surface heating (i.e., H 0 ). Therefore, w e and &#8710; EZ s are the major factors accounting for the influences of varying entrainment processes on entrainment fluxes in a shear-free CBL <ref type="bibr">(Lanotte &amp; Mazzitelli, 2013)</ref>.</p><p>Under fixed soil moisture conditions with an almost constant w&#697;&#952;&#697; 0 , vertical motion is largely enhanced as the EZTG decreases, leading to the increased w * due to the reduced stability across the entrainment zone (Table <ref type="table">S2</ref> in Supporting Information S1). Both w e and z i also increase as the EZTG decreases. Despite the decreased EZTG, the entrainment heat flux (i.e., w&#697;&#952;&#697; z i ) increases primarily due to the enhanced w e . Correspondingly, the entrainment ratio for heat flux (&#945; SH ) becomes more negative, ranging from -0.40 to -0.22. Once buoyancyinduced vertical motions primarily driven by w&#697;&#952;&#697; 0 are established (as quantified by w * and w e ) in the CBL, the top-down fluxes of H 2 O and CO 2 (i.e., w&#697;q&#697; z i and w&#697;C&#697; z i ) are dependent upon &#8710; EZ s. Under fixed soil moisture conditions, there are almost unvarying w&#697;q&#697; 0 and w&#697;C&#697; 0 that represent the unvarying bottom-up forcing. As w e increases with decreasing EZTG, w&#697;q&#697; z i and w&#697;C&#697; z i increase accordingly, leading to a corresponding increase in the entrainment ratio for LH (&#945; LH ) and F c (&#945; F c ) that range from 0.44 to 5.34 and 0.12 to 3.05, respectively (Table <ref type="table">S2</ref> in Supporting Information S1).</p><p>Under fixed f n , &#946; is constant over hourly averaging periods. The progressively enhanced top-down transfer by large eddies with decreasing EZTG becomes evident by the gradually increased negative vertical velocity across the CBL, particularly in its upper part (Figure <ref type="figure">S5</ref> in Supporting Information S1). These strengthened sweeping eddies lead to enhanced downward impingement on the ASL from the mixed layer, regulating turbulent scalar flux gradients in the ASL. Consequently, such increased entrainment fluxes contribute to the increased asymmetry in flux contributions by sweeps and ejections across the CBL, eroding the ASL by enforcing a well-mixed state as EZTG increases. Under fixed soil moisture conditions, EZTG-induced changes in &#945; SH , &#945; LH and &#945; F c range from 10.1% to 24.5%, 54.6% to 147.3%, and 57.4% to 183.7%, respectively (Table <ref type="table">S2</ref> in Supporting Information S1). These entrainment ratios more than compensate for the small z/ z i in the mean continuity equation when applied to the ASL. As f n increases (i.e., decreasing &#946;), more available energy is partitioned into LH 0 (i.e., increasing w&#697;q&#697; 0 ) reducing w&#697;&#952;&#697; 0 and making w&#697;C&#697; 0 more negative due to the enhanced CO 2 uptake accompanying the larger transpiration rate. Under fixed EZTG conditions, the decreased w&#697;&#952;&#697; 0 reduces w * and w e with increasing soil moisture, decreasing w&#697;&#952;&#697; z i , w&#697;q&#697; z i , and w&#697;C&#697; z i (Table <ref type="table">S2</ref> in Supporting Information S1). Consequently, &#945; SH increases in wetter cases, primarily due to the larger reduction in w&#697;&#952;&#697; 0 than w&#697;&#952;&#697; z i , while &#945; LH and &#945; F c decrease. Under fixed EZTG conditions, soil moisture-induced changes in &#945; SH , &#945; LH , and &#945; F c range from 8.9% to 30.1%, -49.0% to -29.3%, and -69.2% to -39.5%, respectively. Comparisons between EZTG-induced top-down processes and soil moisture-induced bottom-up processes, &#945; LH , and &#945; F c . For &#945; SH , a balance exists between top-down and bottomup processes, while for &#945; LH and &#945; F c , the two processes often act in the same direction, making their relative contributions less distinct. The implications of changes in entrainment fluxes of scalars and &#945; for variations in flux divergence and convergence are discussed next.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.2.">Failure of the CFLA in the ASL in the Free Convection Limit</head><p>This section quantitatively explores how EZTG influences the slopes of flux profiles (i.e., changes in flux divergence and convergence), leading to varying degrees of failure in the CFLA in the ASL as highlighted in Figures <ref type="figure">1g</ref>, <ref type="figure">1h</ref>, and 1i. The degree of flux divergence or convergence is reflected by how far &#945; deviates from unity <ref type="bibr">(Liu, Liu, Huang, et al., 2024)</ref>. Specifically, flux divergence of w&#697;q&#697; and w&#697;C&#697; occurs when &#945; LH and &#945; F c are subunity, whereas flux convergence occurs when &#945; LH and &#945; F c exceed unity as represented by changes in the slopes of flux profiles. Under the three fixed soil moisture conditions, EZTG-induced changes in the slopes of w&#697;&#952;&#697;, w&#697;q&#697;, and w&#697;C&#697; profiles range from -7.7% to 1.3%, -10,518% to 794%, and -1,381% to 79%, respectively. This reveals that changes in the EZTG substantially regulate the degrees of flux divergence and convergence, thereby influencing the degrees of the validity of the CFLA. Under fixed EZTG conditions, soil moisture-induced changes in the slopes of w&#697;&#952;&#697;, w&#697;q&#697;, and w&#697;C&#697; profiles range from 64% to 80%, -146% to 1,481%, and -402% to -95%, respectively. Therefore, soil moisture-induced changes in surface energy partitioning alter EZTG-induced entrainment processes, significantly contributing to changes in the slopes of the flux profiles and the degrees of the validity of the CFLA in the ASL. Comparisons between EZTG-induced and soil moisture-induced changes in the slopes indicate that variability in flux divergence of w&#697;&#952;&#697; is more sensitive to changes in bottom-up processes than changes in top-down processes. However, variability in flux divergence and convergence for w&#697;q&#697; and w&#697;C&#697; is more sensitive to changes in top-down processes, or their sensitivities are comparable.</p><p>The distinct behaviors in flux divergence and convergence in w&#697;&#952;&#697;, w&#697;q&#697;, and w&#697;C&#697; (i.e., differences in slopes even under the same conditions) indicate that flux divergence and convergence for w&#697;&#952;&#697;, w&#697;q&#697;, and w&#697;C&#697; are not necessarily proportional (Figure <ref type="figure">1g</ref> vs. Figure <ref type="figure">1h</ref> vs. Figure <ref type="figure">1i</ref>). Field data have shown that heat flux divergence is not directly associated with momentum flux divergence <ref type="bibr">(Fairall et al., 2006;</ref><ref type="bibr">Mahrt et al., 2021;</ref><ref type="bibr">Ortiz-Suslow et al., 2021)</ref>. Our findings, covering a wide range of soil moisture and EZTG conditions, reveal that the CFLA for w&#697;&#952;&#697; is largely violated under wet soil moisture and weak to moderate EZTG conditions. Meanwhile, for w&#697;q&#697; and w&#697;C&#697;, the CFLA is more significantly violated under dry soil moisture and weak to moderate EZTG conditions (i.e., flux convergence cases) and under wet soil moisture and strong EZTG conditions (i.e., flux divergence cases). Variations in &#945; further imply that variability in divergence of w&#697;&#952;&#697; is more sensitive to EZTG Geophysical Research Letters 10.1029/2024GL112619 changes under dry soil conditions, while variability in divergence/convergence of w&#697;q&#697; and w&#697;C&#697; is more sensitive to EZTG changes under wet soil conditions. In summary, variations in top-down scalar fluxes induced by EZTG changes regulate flux divergence and convergence of scalars in the ASL, contributing to different degrees of failure of the CFLA.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="3.3.">EZTG-Induced Energy Balance Non-Closure</head><p>Eddy covariance fluxes are often considered underestimated and overestimated if measured fluxes at any height in the <ref type="bibr">ASL (i.e., w&#697;&#952;&#697;(z)</ref> , w&#697;q&#697;(z) , and w&#697;C&#697;(z)) are less and greater than their corresponding surface interfacial fluxes (i.e., w&#697;&#952;&#697; 0 , w&#697;q&#697; 0 , and w&#697;C&#697; 0 ), respectively. How EZTG-induced variations in underestimated SH and underestimated/overestimated LH in the ASL affect the non-closure is now explored considering the varying degrees of failure of the CFLA. Note that all fluxes are horizontally averaged across the domain, and the energy balance is guaranteed by the land-surface module at the surface-atmosphere interface.</p><p>Under each f n category, CR decreases significantly with increasing EZTG, mainly due to a decrease in LH (Figure <ref type="figure">1j</ref>). CR can exceed unity for weak EZTG cases, such as EZweak-D, EZweak-M, EZweak-W, and EZmoderate-D, due to LH flux convergence (i.e., overestimated LH). Conversely, CR is less than 1 for cases with moderate to strong EZTG conditions with LH flux divergence. For cases with CR &gt; 1, CR can increase with increasing height, or vice (Figure <ref type="figure">1j</ref>). For each soil moisture condition, changes in SH/ (SH 0 + LH 0 ) are small, but LH/ (SH 0 + LH 0 ) varies substantially as EZTG decreases. For instance, SH/ (SH 0 + LH 0 ) at 40 m is 0.62, 0.63, and 0.63, and LH/ (SH 0 + LH 0 ) at 40 m is 0.41, 0.38, and 0.34 for EZweak-D, EZmoderate-D, and EZstrong-D, respectively (Figures <ref type="figure">1k</ref> and <ref type="figure">1l</ref>). These results suggest that larger variability in LH flux divergence/ convergence than SH divergence in response to changes in top-down processes may be a major mechanism contributing to varying non-closure observed across global EC flux sites.</p><p>Furthermore, CR at z = 40 m under each fixed soil moisture condition shows substantial spatial variability, with values reaching as high as six at some locations. This spatial variability changes with EZTG (Figure <ref type="figure">2</ref>) and is associated with the spatial variability in LH more than SH (Figures S6, S7 in Supporting Information S1). Prominent peaks with CR &gt; 1 are present; for small EZTG, the overestimated LH primarily contributes to these peaks, while for large EZTG, the overestimated SH dominate (Figures S6, S7 in Supporting Information S1). These results highlight that spatial variability in EZTG-induced change in SH and LH in the ASL significantly contributes to the CR, even over homogeneous landscapes. This spatial heterogeneity is significant because of its practical consequences to EC scalar flux measurements. Flux towers, which provide point measurements, cannot capture simultaneous spatial and temporal averages of scalar fluxes. This limitation has two practical implications. First, the averaging period required to ensure that the temporal derivative of the vertical gradient of a scalar (i.e., &#8706; &#8706;t ( &#8706;S &#8706;z ) = 0) is significantly longer than typical EC averaging times, necessitating a longer period to sample enough turbulent eddies and cancel transient effects. Second, limited sampling durations (e.g., 30 min to 1 hr) truncate the local co-spectrum, introducing biases that reduce turbulent flux measurements. This truncation affects flux gradient estimations differently across height, making them sensitive to the averaging interval. These factors together exacerbate challenges in flux measurements, highlighting a need for future studies on timeaveraging versus ensemble-averaging under different entrainment conditions.</p><p>Previously, non-closure seemed to imply that both SH and LH are simultaneously underestimated compared to their true surface values. This is the reasoning underpinning the Bowen-ratio-preserving correction method <ref type="bibr">(Twine et al., 2000)</ref>, which allocates the energy balance residual to SH and LH by preserving &#946;. This method assumes that &#946; is less impacted by the underestimation of SH and LH measured in the ASL. When the CFLA holds in the ASL, SH and LH remain constant with height, resulting in a height-invariant. Based on this premise, this method assumes that the EC-derived &#946; is robust. Using this &#946;, along with net radiation and soil heat flux, the surface values of SH and LH can be inferred by this method. For this method to be valid, however, both SH and LH have to be proportionally underestimated. The work here shows that changes in &#946; 0 are minimal across the three entrainment cases under each soil moisture regime, yielding mean &#946; values (&#946; 0 ) of 1.94 for dry soil, 0.90 for moderately dry soil, and 0.50 for wet soil (Table <ref type="table">S2</ref> in Supporting Information S1). These results indicate that even with the same &#946; 0 value under fixed soil moisture conditions, CR can exceed or fall below 1, indicating instances where SH is underestimated while LH is overestimated, even at the same &#946; 0 .</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Geophysical Research Letters</head></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>10.1029/2024GL112619</head><p>When CR &lt; 1, the positive residual (res) of the energy balance is distributed between SH and LH to obtain SH 0 = SH + &#8710;SH and LH 0 = LH + &#8710;LH, where &#8710;SH = res &#215; x a and &#8710;LH = res &#215; (1x a ) are positive and x a &lt; 1 is determined by preserving &#946; (i.e., SH/ LH = SH 0 / LH 0 ). However, this correction fails for the three cases with CR &lt; 1 (i.e., EZmoderate-M, EZstrong-M, and EZmoderate-W), as adding a positive &#8710;LH to the already overestimated LH leads to an artificially higher LH 0 , while SH 0 is biased lower than expected by adding a smaller &#8710;SH to achieve the energy balance. For CR &gt; 1, the negative residual (res) is partitioned into SH and LH, based on the same practice. However, for CR &gt; 1, adding a negative &#8710;SH to SH leads to further underestimated SH 0 for the four cases (i.e., EZweak-D, EZmoderate-D, EZweak-M, and EZweak-W). These findings indicate that while the Bowen-ratio-preserving correction method may achieve surface energy balance closure, it does not guarantee accurate estimate of SH 0 and LH 0 in these cases. Moreover, it cannot be general and independent of the entrainment fluxes. EZTG-induced top-down processes substantially affect CR by altering the degrees of SH flux divergence and LH flux convergence/divergence. Therefore, parameters related to entrainment processes should be included when developing methods to correct the flux imbalance.</p><p>Since large turbulent eddies are a primary mechanism for non-closure and the same large eddies carry heat and water vapor simultaneously, it was previously argued that both SH and LH in the ASL should be simultaneously underestimated in case of non-closure. However, it is now apparent that dissimilarity between heat and humidity flux transport is often observed under the influence of top-down large eddies <ref type="bibr">(Gao et al., 2018</ref><ref type="bibr">, C. Liu, Liu, et al., 2021)</ref>. Moreover, the increased CR with an increasing &#946; is explained by overestimated LH due to LH flux convergence, despite SH being underestimated <ref type="bibr">(Liu, Liu, Huang, et al., 2024)</ref>. Thus, both overestimated LH and underestimated SH can simultaneously occur in the ASL with the influence of the same large eddies, invalidating the Bowen-ratio-preserving correction method for proportionately adjusting SH and LH to achieve the closure.</p><p>The applicability of the Bowen-ratio-preserving correction method can be further assessed theoretically. The CR can be expressed as:</p><p>where SH EC and LH EC are SH and LH measured by EC at a specific height in the ASL. The &#946; EC and &#946; 0 are the ECderived and surface &#946;, respectively. Substituting the relation LH EC / LH 0 = w&#697;q&#697; / w&#697;q&#697; 0 from Equation 3 into Equation 4 yields:</p><p>This equation indicates that CR is influenced by the variability of &#945; LH , highlighting the significant role of boundary layer processes in regulating CR. The influence of the variability of &#945; SH on CR is embedded in &#946; EC , which itself is a function of SH. However, forcing &#946; EC = &#946; 0 in Equation <ref type="formula">5</ref>, as suggested by the Bowen-ratiopreserving correction method, assumes that CR depends solely on &#945; LH . This assumption is fundamentally inaccurate since it neglects the impact of the typically underestimated SH on CR. Further, correcting SH EC and LH EC to achieve closure by making CR = 1 in Equation 5 yields:</p><p>Equation 6 demonstrates that &#946; 0 &#8800; &#946; EC under CR = 1 due to the influence of the availability of &#945; LH as long as &#945; LH &#8800; 1. However, the condition &#946; 0 = &#946; EC under CR = 1 holds only when &#945; LH = 1, which is rare since &#945; LH = 1 leads to &#945; SH = 1 under &#946; 0 = &#946; EC in the ASL. That means that both SH and LH should meet the CFLA simultaneously. Taking the ratio of &#946; EC and &#946; 0 and then incorporating the relations from Equation 3 for SH and LH gives:</p><p>Equation 7 indicates that &#946; 0 = &#946; EC holds only when &#945; SH = &#945; LH , a condition necessary for the Bowen-ratiopreserving correction method to perform as intended and a scenario in which the method may yield better results <ref type="bibr">(Zhou et al., 2023)</ref>. Therefore, the proposed theoretical arguments here reveal that the validity of the Bowenratio-preserving correction method is limited to situations where &#945; SH and &#945; LH are nearly equal, a condition not typically met particularly under convective atmospheric states.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head n="4.">Conclusions</head><p>The LES results of steady-state CBL flows indicate that changes in EZTG significantly regulate the linear dependency of scalar flux profiles with height over a horizontally homogeneous grass landscape with varying soil moisture levels. As the EZTG decreases, the entrainment fluxes for all scalars increase primarily due to increased entrainment velocity, leading to increased asymmetric scalar flux contributions between top-down and bottom-up transport. These changes in asymmetry alter the slopes of scalar flux profiles and the degrees of flux divergence and convergence in the ASL, contributing to varying degrees of failure in the CFLA.</p><p>Larger variations in the degrees of flux divergence for SH occur under drier soil conditions, mainly due to a combined effect of EZTG-induced changes in the boundary-layer height and top-down heat fluxes. In contrast, larger variations in the degrees of flux divergence/convergence for LH and F c occur under wetter soil conditions, as their top-down fluxes are more sensitive to EZTG variability.</p></div>
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Geophysical Research Letters</head><p>10.1029/2024GL112619</p><p>Eddy covariance fluxes in the ASL are underestimated or overestimated when flux divergence or convergence occur, respectively, compared to the "true" surface fluxes. Therefore, EZTG-induced variations in flux divergence and convergence in the ASL regulate the degrees of the non-closure. CR is less than unity under strong EZTG conditions across all the soil moisture levels but can exceed unity under weak EZTG, especially with drier soil, where larger EZTG-induced top-down LH variations lead to greater variability in flux divergence/convergence of LH. The LES results suggest that large site-to-site variations in CR across global EC sites may be associated with greater variations in the degrees of flux divergence/convergence for LH more than flux divergence for SH or associated with the violation of the CFLA for LH more than for SH. Additionally, flux divergence and convergence for F c experience the largest variations in response to the greatest variabilities in EZTG-induced entrainment CO 2 fluxes compared to SH and LH. This suggests that F c measured by EC systems at flux sites may be subject to more significant underestimation or overestimation due to the influence of boundary-layer processes. Notably, unlike temperature, &#8710; EZ s for CO 2 (and to a lesser extent, water vapor) may be positive or negative depending on the level of CO 2 concentrations in the free atmosphere. When &#945; &lt; 0, deviations from a CFLA can be substantial. This study highlights the emerging need to quantify the influence of entrainment processes at the top of the boundary layer on flux divergence and convergence in the ASL. Entrainment may hold the key to interpreting EC fluxes, addressing the non-closure issue, and evaluating EC derived carbon balances. Additionally, over complex terrain covered by forest canopies, features such as downwind recirculation zones in sloping terrain, influenced by canopy-induced pressure gradients, advection, and drag, create spatial variability in flow patterns and scalar exchanges. These processes likely contribute to varying degrees of non-closure, highlighting the need for future studies to explore their impacts in heterogeneous landscapes.</p></div><note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_0"><p>19448007, 2025, 5, Downloaded from https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2024GL112619, Wiley Online Library on [25/07/2025]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License</p></note>
			<note xmlns="http://www.tei-c.org/ns/1.0" place="foot" xml:id="foot_1"><p>10.1029/2024GL112619</p></note>
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