Abstract Over 20 years ago double‐stranded RNA (dsRNA) was described as the trigger of RNAi interference (RNAi)‐based gene silencing. This paradigm has held since, especially for insect biopesticide technologies where dsRNAs, similar to those described in 1998, are used to inhibit gene expression. In the intervening years, investigation of RNAi pathways has revealed the small RNA effectors of RNAi are diverse and rapidly evolving. The rich biology of insect small RNAs suggests potential to use multiple RNAi modes for manipulating gene expression. By exploiting different RNAi pathways, the menu of options for pest control can be expanded and could lead to better tailored solutions. Fortunately, basic delivery strategies used for dsRNA such as direct application or transgenic expression will translate well between RNAs transiting different RNAi pathways. Importantly, further engineering of RNAi‐based biopesticides may provide an opportunity to address dsRNA insensitivity seen in some pests. Characterization of RNAi pathways unique to target species will be indispensable to this end and may require thinking beyond long dsRNA. © 2020 Society of Chemical Industry
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RNAi Strategies Against Downy Mildews: Insights Into dsRNA Uptake and Silencing
ABSTRACT Downy mildew (DM) diseases are caused by destructive obligate pathogens with limited control options, posing a significant threat to global agriculture. RNA interference (RNAi) has emerged as a promising, environmentally sustainable strategy for disease management. We evaluated the efficacy of dsRNA‐mediated RNAi in suppressing key biological functions in DM pathogens ofArabidopsis thaliana, pea and lettuce:Hyaloperonospora arabidopsidis(Hpa),Peronospora viciaef. sp.pisi(Pvp) andBremia lactucae(Bl), respectively. Conserved genes,cellulose synthase 3(CesA3) andbeta‐tubulin(BTUB), were targeted. Silencing these genes significantly impaired spore germination and infection across species and reduced gene expression correlated with suppressed sporulation, confirming silencing efficacy. We tested dsRNAs from chemical synthesis, in vitro transcription, andEscherichia coliexpression. Uptake and silencing efficiency varied with dsRNA length and concentration. InHpa, short dsRNAs (21–25 bp) produced a variable spore germination rate, with 25 bp dsRNA causing a 247.10% increase, whereas longer dsRNAs (≥ 30 bp) completely inhibited germination. Similarly, inPvp, dsRNAs of 21–25 bp resulted in a 73.05%–77.46% germination rate, while 30–75 bp dsRNAs abolished germination. Confocal microscopy using Cy‐5‐labelled short‐synthesised dsRNA (SS‐dsRNA) confirmed uptake by spores. Sequence specificity influenced efficacy, highlighting the need for precise target design. Multiplexed RNAi impacted silencing synergistically, further reducing germination and sporulation inHpa. Importantly, SS‐dsRNA‐mediated silencing was durable, with reduced gene expression sustained at 4, 7, 10 and 11 days post‐inoculation. Taken together, our findings demonstrate the potential of dsRNA‐mediated gene silencing as a precise, sustainable tool for managing DM pathogens in multiple crop species.
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- Award ID(s):
- 2319757
- PAR ID:
- 10645921
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Molecular Plant Pathology
- Volume:
- 26
- Issue:
- 8
- ISSN:
- 1464-6722
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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