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1. Nonnative Species Richness and Dominance Reveal Differing Support for Invasion Theory at a Continental Extent

   https://doi.org/10.1111/geb.70044  

   Thompson, Lily M; Annis, William K; Midway, Stephen R; Olden, Julian D; Peoples, Brandon K (May 2025, Global Ecology and Biogeography)

   ABSTRACT AimEmpirical tests of conceptual hypotheses describing species invasions often differ depending on the spatial scale (spatial resolution and extent of study area) at which they were conducted. Some of this disparity may arise from tradeoffs in data quality necessitating the use of different indices of community invadedness among scales. Local‐scale studies typically use fine‐resolution, descriptive measures of community invadedness (‘dominance’, the proportion nonnative individuals) at limited spatial extents, while macroscale studies often aggregate datasets to cover large spatial extents but use coarser spatial resolution and less descriptive indices (nonnative species richness). We investigated the consequences of using different indices to represent community invadedness at different spatial scales, and explored the implications for hypothesis testing when nonnative richness and dominance are not related. Location23,793 stream segments within 17 regional watersheds, conterminous United States. Time Period2000–2023. Major Taxa StudiedFreshwater fishes. MethodsUsing a large‐extent, fine‐resolution dataset, we evaluated the correlation between nonnative species richness and dominance in communities, and compared empirical support for prominent invasion hypotheses (biotic resistance, disturbance facilitation) in identical Bayesian hierarchical models with community invadedness represented by each metric. ResultsNonnative richness and dominance were weakly correlated, allowing us to classify communities into four archetypes based on relationships between the two indices. Empirical support for both invasion hypotheses differed between the two indices of community invadedness both overall and within regional watersheds. Main ConclusionsNonnative species richness and dominance describe different facets of the invasion process and may under‐ or over‐represent community invadedness when considered alone. Empirical disparity between models estimating the two metrics may be an important source of scale‐dependent inference in invasion ecology. When assembling datasets for macroscale studies, retaining fine spatial resolution as much as possible will allow researchers opportunities to use more descriptive and potentially complementary indices of community invadedness. 

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2. Spatial Scale and the Underestimation of Stream Fish Community Invadedness

   https://doi.org/10.1111/geb.13951  

   Thompson, Lily M; Annis, William K; Midway, Stephen R; Olden, Julian D; Peoples, Brandon K (January 2025, Global Ecology and Biogeography)

   ABSTRACT Scale‐Dependency of Native StatusClassifying populations as native or nonnative requires well‐defined range boundaries for species. While many studies define native status according to large biogeographic realms, natural dispersal barriers often limit species distributions at regional or smaller spatial extents. As such, native/nonnative definitions are inherently scale‐dependent and estimates of community invadedness thus depend on the spatial resolution at which native status is defined. For example, nonnative species can be introduced among realms, among regions within realms, and among ecological provinces within regions (hereafter, simply “provinces”). By explicitly considering the scale‐dependency of native/nonnative status definitions, we can more effectively compare results across studies, more comprehensively evaluate the degree of invasion levels, and more objectively communicate the native status of a species. Location30,034 stream segments, conterminous United States. Time Period2000–2023. Major Taxa StudiedFreshwater fishes. Quantifying Fish Community Invadedness Across<styled-content style='fixed-case'>US</styled-content>StreamsWe illustrate the importance of scale‐dependent native status definitions by quantifying nonnative species richness and relative abundance in stream fish communities across the United States, finding that provincially nonnative species are nearly four times as prevalent as extra‐realm nonnative species, and represented approximately 10% of all individuals in average community surveys. ImplicationsUnrealistically broad native status definitions underestimate community invadedness. Dismissing regionally and provincially nonnative species can have severe ecological consequences, including displacement and hybridisation with native species and the loss of unique communities through biotic homogenisation. These consequences may undermine efforts to maintain and protect distinct local biodiversity and conserve endemic species. 

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3. Cross‐scale interactions mediate local drivers of nonnative species richness

   https://doi.org/10.1002/ecog.08379  

   Thompson, Lily M; Annis, William K; Midway, Stephen R; Olden, Julian D; Peoples, Brandon K (February 2026, Ecography)

   Many well‐supported hypotheses seek to explain drivers of nonnative species richness across spatial scales, but evidence for common patterns among regions and taxa remains inconclusive. This study investigates why consistent patterns are elusive by estimating and assessing cross‐scale interactions, wherein large‐scale factors contextualize patterns measured at smaller scales. We investigated whether local relationships of disturbance and native species richness with nonnative species richness are moderated by regional native gamma diversity. Regions with higher gamma diversity, we hypothesized, would be unfavorable to nonnative species due to high levels of competition and reduced niche availability, thus mediating local effects of native richness and disturbance on nonnative species richness. Using a fine resolution stream fish community dataset covering 159 regional watersheds in the conterminous United States during 2000–2023, we quantified cross‐scale interactions using a two‐level Bayesian hierarchical model. In the first level, we estimated the effects of disturbance and native richness on nonnative richness in local stream segments indexed by region. In the second level, we used this regional index to estimate cross‐scale interactions of native gamma diversity (regional‐level richness) on the first‐level relationships. Local nonnative richness was generally positively associated with native richness and disturbance. However, these relationships were reduced in regions with more diverse native stream fish assemblages. Thus, native gamma diversity provided an important mechanistic context for local nonnative richness relationships across regional watersheds through a negative cross‐scale interaction. As large spatial datasets become increasingly available, accounting for cross‐scale interactions in inter‐regional observational studies will be critical for understanding ecological relationships and may provide a predictive framework for studies with conflicting support for differing conceptual models. 

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4. Predation by a ciliate community mediates temperature and nutrient effects on a peatland prey prokaryotic community

   https://doi.org/10.1128/msphere.00309-25  

   DeWitt, Katrina; Carrell, Alyssa A; Rocca, Jennifer D; Votzke, Samantha; Yammine, Andrea; Peralta, Ariane L; Weston, David J; Pelletier, Dale A; Gibert, Jean P (June 2025, mSphere)

   McMahon, Katherine (Ed.)

   ABSTRACT Temperature significantly impacts microbial communities’ composition and function, which plays a vital role in the global carbon cycle that determines climate change. Nutrient influxes often accompany rising temperatures due to human activity. While ecological interactions between different microorganisms could shape their response to environmental change, we do not understand how predation may influence these responses in a warmer and increasingly nutrient-rich world. Here, we assess whether predation by a ciliate community of bacterial consumers influences changes in the diversity, biomass, and function of a freshwater prokaryotic community under different temperature and nutrient conditions. We found that predator presence mediates the effects of temperature and nutrients on the total prokaryotic community biomass and composition through various mechanisms, including direct and indirect effects. However, the total community function was resilient. Our study supports previous findings that temperature and nutrients are essential drivers of microbial community composition and function but also demonstrates how predation can mediate these effects, indicating that the biotic context is as important as the abiotic context to understanding microbial responses to novel climates.IMPORTANCEWhile the importance of the abiotic environment in microbial communities has long been acknowledged, how prevalent ecological interactions like predation may influence these microbial community responses to shifting abiotic conditions is largely unknown. Our study addresses the complex interplay between temperature, nutrients, predation, and their joint effects on microbial community diversity and function. Our findings suggest that while temperature and nutrients are fundamental drivers of microbial community dynamics, the presence of predators significantly alters these responses. Our study underscores the impact of abiotic factors on microbial communities and the importance of accounting for the biotic context in which these occur to understand, let alone predict, these responses properly. 

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5. Determinants of vector-borne avian pathogen occurrence in a mosaic of habitat fragmentation in California

   https://doi.org/10.1186/s13071-025-06742-x  

   Amaya-Mejia, Wilmer; Pavan, Lucas; Lilly, Marie; Swei, Andrea; Dirzo, Rodolfo; Sehgal, Ravinder_N M (December 2025, Parasites & Vectors)

   Abstract BackgroundAs habitat fragmentation increases, ecological processes, including patterns of vector-borne pathogen prevalence, will likely be disrupted, but ongoing investigations are necessary to examine this relationship. Here, we report the differences in the prevalence of Lyme disease (Borrelia burgdorferisensu lato, s.l.) and haemoproteosis (Haemoproteusspp.) pathogens in avian populations of a fragmented habitat.B. burgdorferis.l. is a generalist pathogen that is transmitted byIxodes pacificusvectors in California, andHaemoproteusis an avian parasite transmitted byCulicoidesvectors. MethodsTo determine whether biotic (avian and mammalian abundance) or abiotic characteristics (patch size and water availability) correlated with infection prevalence change, we screened 176 birds sampled across seven sites in oak woodland habitat in northern California. ResultsWhile biotic factors correlated with an increase in both pathogens, infection prevalence ofHaemoproteusspp. was only associated with individual-level traits, specifically foraging substrate and diet, andB. burgdorferis.l. was associated with community-level characteristics, both total mammal and, specifically, rodent abundance. Proximity to water was the only abiotic factor found to be significant for both pathogens and reinforces the importance of water availability for transmission cycles. Larger patch sizes did not significantly affect infection prevalence ofHaemoproteus,but did increase the prevalence ofB. burgdorferi. ConclusionsThese results highlight that while environmental factors (specifically habitat fragmentation) have a limited role in vector-borne pathogen prevalence, the indirect impact to biotic factors (community composition) can have consequences for bothHaemoproteusandB. burgdorferiprevalence in birds. Given the pervasiveness of habitat fragmentation, our results are of broad significance. Graphical abstract 

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