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Multi-walled carbon nanotube (MWCNT) filters incorporated with carbon quantum dots (CDots) or single-walled carbon nanotubes (SWCNTs) were produced for bacteria removal from aqueous solutions and also for inactivating the captured bacteria. TMTP Millipore membranes were used as the base of these filters. The results showed that filters with higher MWCNT loading had higher bacterial removal efficiencies. Filters with a MWCNT loading of 4.5 mg were highly effective at removing bacteria from aqueous solution, resulting in a log reduction of 6.41, 6.41, and 5.41 of E. coli cell numbers in filtrates compared to MWCNT filters without coating, MWCNTs filters with 0.15 mg CDot coating, and MWCNTs filters with 0.15 mg SWCNT coating, respectively. Ionic strength played an important role in bacteria removal. A higher NaCl concentration resulted in higher bacteria removal efficiencies of the filters. Both CDot coatings and SWCNT coatings did not significantly affect the MWCNT filter effects ( P > 0.05). The coatings, especially CDot coatings, significantly inhibited the activities of bacteria retained on the filter surfaces ( P < 0.05). The inhibitory rates were 94.21% or 73.17% on the MWCNT filter surfaces coated with 0.2 mg CDots or SWCNTs, respectively. These results demonstrated that MWCNT filters with CDot coatings were highly effective to remove bacteria from water and to inhibit the activities of the captured bacteria on filter surfaces.