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Creators/Authors contains: "Allemand, Denis"

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  1. Abstract The ocean has recently taken centre stage in the global geopolitical landscape. Despite rising challenges to the effectiveness of multilateralism, attention to ocean issues appears as an opportunity to co-create pathways to ocean sustainability at multiple levels. The ocean science community, however, is not sufficiently well organised to advance these pathways and provide policy input. The Intergovernmental Panel on Climate Change and the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services demonstrate how knowledge consensus and integration have been instrumental in charting global pathways and eliciting commitments to address, respectively, climate change and biodiversity loss. An equally impactful global platform with a thematic focus on ocean sustainability is needed. Here we introduce the International Panel for Ocean Sustainability (IPOS) as a coordinating mechanism to integrate knowledge systems to forge a bridge across ocean science-policy divides collectively. The IPOS will enrich the global policy debate in the Ocean Decade and support a shift toward ocean sustainability. 
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  2. Abstract Endogenous viral elements (EVEs) offer insight into the evolutionary histories and hosts of contemporary viruses. This study leveraged DNA metagenomics and genomics to detect and infer the host of a non-retroviral dinoflagellate-infecting +ssRNA virus (dinoRNAV) common in coral reefs. As part of the Tara Pacific Expedition, this study surveyed 269 newly sequenced cnidarians and their resident symbiotic dinoflagellates (Symbiodiniaceae), associated metabarcodes, and publicly available metagenomes, revealing 178 dinoRNAV EVEs, predominantly among hydrocoral-dinoflagellate metagenomes. Putative associations between Symbiodiniaceae and dinoRNAV EVEs were corroborated by the characterization of dinoRNAV-like sequences in 17 of 18 scaffold-scale and one chromosome-scale dinoflagellate genome assembly, flanked by characteristically cellular sequences and in proximity to retroelements, suggesting potential mechanisms of integration. EVEs were not detected in dinoflagellate-free (aposymbiotic) cnidarian genome assemblies, including stony corals, hydrocorals, jellyfish, or seawater. The pervasive nature of dinoRNAV EVEs within dinoflagellate genomes (especiallySymbiodinium), as well as their inconsistent within-genome distribution and fragmented nature, suggest ancestral or recurrent integration of this virus with variable conservation. Broadly, these findings illustrate how +ssRNA viruses may obscure their genomes as members of nested symbioses, with implications for host evolution, exaptation, and immunity in the context of reef health and disease. 
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  3. null (Ed.)