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Abstract The capacity to leverage high resolution mass spectrometry (HRMS) with transient isotope labeling experiments is an untapped opportunity to derive insights on context-specific metabolism, that is difficult to assess quantitatively. Tools are needed to comprehensively mine isotopologue information in an automated, high-throughput way without errors. We describe a tool, Stable Isotope-assisted Metabolomics for Pathway Elucidation (SIMPEL), to simplify analysis and interpretation of isotope-enriched HRMS datasets. The efficacy ofSIMPELis demonstrated through examples of central carbon and lipid metabolism. In the first description, a dual-isotope labeling experiment is paired withSIMPELand isotopically nonstationary metabolic flux analysis (INST-MFA) to resolve fluxes in central metabolism that would be otherwise challenging to quantify. In the second example,SIMPELwas paired with HRMS-based lipidomics data to describe lipid metabolism based on a single labeling experiment. Available as an R package,SIMPELextends metabolomics analyses to include isotopologue signatures necessary to quantify metabolic flux.more » « less
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Research integrated into higher education curricula has been shown by numerous studies to be beneficial to undergraduate students. Citizen science provides an alternative to research performed in a lab and is gaining traction as a good choice for integration into classes. The Undergraduate Student Experiences in Citizen Science (USE Cit Sci) research collaboration network is working to help more instructors in higher education adopt citizen science as part of their curriculum by providing training and educational materials. To date, the Network has identified areas of critical need for citizen science to be more readily used in higher education courses and created a clearinghouse of lessons for faculty to use freely. Forthcoming products of the USE Cit Sci network include direct partnerships between educators and citizen science projects in addition to a peer mentoring program. Given the preponderance of ecology citizen science projects available, bringing this educational opportunity to students opens new avenues of pedagogical experiences.more » « less
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Recent reports of insect declines have raised concerns about the potential for concomitant losses to ecosystem processes. However, understanding the causes and consequences of insect declines is challenging, especially given the data deficiencies for most species. Needed are approaches that can help quantify the magnitude and potential causes of declines at levels above species. Here we present an analytical framework for assessing broad‐scale plant–insect phenologies and their relationship to community‐level insect abundance patterns. We intentionally apply a species‐neutral approach to analyse trends in phenology and abundance at the macroecological scale. Because both phenology and abundance are critical to ecosystem processes, we estimate aggregate metrics using the overwintering (diapause) stage, a key species trait regulating phenology and environmental sensitivities. This approach can be used across broad spatiotemporal scales and multiple taxa, including less well‐studied groups. Using community (‘citizen’) science butterfly observations from multiple platforms across the Eastern USA, we show that the relationships between environmental drivers, phenology and abundance depend on the diapause stage. In particular, egg‐diapausing butterflies show marked changes in adult‐onset phenology in relation to plant phenology and are rapidly declining in abundance over a 20‐year span across the study region. Our results also demonstrate the negative consequences of warmer winters for the abundance of egg‐diapausing butterflies, irrespective of plant phenology. In sum, the diapause stage strongly shapes both phenological sensitivities and developmental requirements across seasons, providing a basis for predicting the impacts of environmental change across trophic levels. Utilizing a framework that ties thermal performance across life stages in relation to climate and lower‐trophic‐level phenology provides a critical step towards predicting changes in ecosystem processes provided by butterflies and other herbivorous insects into the future.more » « less
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Changes in phenology in response to ongoing climate change have been observed in numerous taxa around the world. Differing rates of phenological shifts across trophic levels have led to concerns that ecological interactions may become increasingly decoupled in time, with potential negative consequences for populations. Despite widespread evidence of phenological change and a broad body of supporting theory, large-scale multitaxa evidence for demographic consequences of phenological asynchrony remains elusive. Using data from a continental-scale bird-banding program, we assess the impact of phenological dynamics on avian breeding productivity in 41 species of migratory and resident North American birds breeding in and around forested areas. We find strong evidence for a phenological optimum where breeding productivity decreases in years with both particularly early or late phenology and when breeding occurs early or late relative to local vegetation phenology. Moreover, we demonstrate that landbird breeding phenology did not keep pace with shifts in the timing of vegetation green-up over a recent 18-y period, even though avian breeding phenology has tracked green-up with greater sensitivity than arrival for migratory species. Species whose breeding phenology more closely tracked green-up tend to migrate shorter distances (or are resident over the entire year) and breed earlier in the season. These results showcase the broadest-scale evidence yet of the demographic impacts of phenological change. Future climate change–associated phenological shifts will likely result in a decrease in breeding productivity for most species, given that bird breeding phenology is failing to keep pace with climate change.more » « less
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ABSTRACT Coral skeletal structures can provide a robust record of nuclear bomb produced 14 C with valuable insight into air-sea exchange processes and water movement with applications to fisheries science. To expand these records in the South Pacific, a coral core from Tutuila Island, American Samoa was dated with density band counting covering a 59-yr period (1953–2012). Seasonal signals in elemental ratios (Sr/Ca and Ba/Ca) and stable carbon (δ 13 C) values across the coral core corroborated the well-defined annual band structure and highlighted an ocean climate shift from the 1997–1998 El Niño. The American Samoa coral 14 C measurements were consistent with other regional records but included some notable differences across the South Pacific Gyre (SPG) at Fiji, Rarotonga, and Easter Island that can be attributed to decadal ocean climate cycles, surface residence times and proximity to the South Equatorial Current. An analysis of the post-peak 14 C decline associated with each coral record indicated 14 C levels are beginning to merge for the SPG. This observation, coupled with otolith measurements from American Samoa, reinforces the perspective that bomb 14 C dating can be performed on fishes and other marine organisms of the region using the post-peak 14 C decline to properly inform fisheries management in the South Pacific.more » « less
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