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Creators/Authors contains: "Beach, James"

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  1. In the first decades of the 21stcentury, there has been a global trend towards digitisation and the mobilisation of data from natural history museums and research institutions. The development of national and international aggregator systems, which focused on data standards, made it possible to access millions of museum specimen records. These records serve as an empirical foundation for research across various fields. In addition, community efforts have expanded the concept of natural history collection specimens to include physical preparations and digital resources, resulting in the Digital Extended Specimen (DES), which also includes derived and related data. Within this context, the paper proposes using the FAIR Digital Object (FDO) framework to accelerate the global vision of the DES, arguing that FDO-enabled infrastructures can reduce barriers to the discovery and access of specimens, help ensure credit back to contributors and increase the amount of research that incorporates biodiversity data. 
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  2. Abstract PurposeThis study aims to characterize the dependence of measured retinal arterial and venous saturation on vessel diameter and central reflex in retinal oximetry, with an ultimate goal of identifying potential causes and suggesting approaches to improve measurement accuracy. MethodsIn 10 subjects, oxygen saturation, vessel diameter and optical density are obtained using Oxymap Analyzer software without diameter correction. Diameter dependence of saturation is characterized using linear regression between measured values of saturation and diameter. Occurrences of negative values of vessel optical densities (ODs) associated with central vessel reflex are acquired from Oxymap Analyzer. A conceptual model is used to calculate the ratio of optical densities (ODRs) according to retinal reflectance properties and single and double‐pass light transmission across fixed path lengths. Model‐predicted values are compared with measured oximetry values at different vessel diameters. ResultsVenous saturation shows an inverse relationship with vessel diameter (D) across subjects, with a mean slope of −0.180 (SE = 0.022) %/μm (20 < D < 180 μm) and a more rapid saturation increase at small vessel diameters reaching to over 80%. Arterial saturation yields smaller positive and negative slopes in individual subjects, with an average of −0.007 (SE = 0.021) %/μm (20 < D < 200 μm) across all subjects. Measurements where vessel brightness exceeds that of the retinal background result in negative values of optical density, causing an artifactual increase in saturation. Optimization of model reflectance values produces a good fit of the conceptual model to measured ODRs. ConclusionMeasurement artefacts in retinal oximetry are caused by strong central vessel reflections, and apparent diameter sensitivity may result from single and double‐pass transmission in vessels. Improvement in correction for vessel diameter is indicated for arteries however further study is necessary for venous corrections. 
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