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Abstract. Isoprene has the largest global non-methane hydrocarbon emission, and the oxidation of isoprene plays a crucial role in the formation of secondary organic aerosol (SOA). Two primary processes are known to contribute to SOA formation from isoprene oxidation: (1) the reactive uptake of isoprene-derived epoxides on acidic or aqueous particle surfaces and (2) the absorptive gas–particle partitioning of low-volatility oxidation products. In this study, we developed a new multiphase condensed isoprene oxidation mechanism that includes these processes with key molecular intermediates and products. The new mechanism was applied to simulate isoprene gas-phase oxidation products and SOA formation from previously published chamber experiments under a variety of conditions and atmospheric observations during the Southern Oxidant and Aerosol Studies (SOAS) field campaign. Our results show that SOA formation from most of the chamber experiments is reasonably reproduced using our mechanism, except when the concentration ratios of initial nitric oxide to isoprene exceed ∼ 2, the formed SOA is significantly underpredicted. The SOAS simulations also reasonably agree with the measurements regarding the diurnal pattern and concentrations of different product categories, while the total isoprene SOA remains underestimated. The molecular compositions of the modeled SOA indicate that multifunctional low-volatility products contribute to isoprene SOA more significantly than previously thought, with a median mass contribution of ∼ 57 % to the total modeled isoprene SOA. However, this contribution is intricately intertwined with IEPOX-derived SOA (IEPOX: isoprene-derived epoxydiols), posing challenges for their differentiation using bulk aerosol composition analysis (e.g., the aerosol mass spectrometer with positive matrix factorization). Furthermore, the SOA from these pathways may vary greatly, mainly dependent on the volatility estimation and treatment of particle-phase processes (i.e., photolysis and hydrolysis). Our findings emphasize that the various pathways to produce these low-volatility species should be considered in models to more accurately predict isoprene SOA formation. The new condensed isoprene chemical mechanism can be further incorporated into regional-scale air quality models, such as the Community Multiscale Air Quality Modelling System (CMAQ), to assess isoprene SOA formation on a larger scale. 

Volatile organic compounds (VOCs) range in their reaction rates with atmospheric oxidants by several orders of magnitude. Therefore, studying their atmospheric concentrations across seasons and years requires isomer resolution to fully understand their impact on oxidant budgets and secondary organic aerosol formation. An automated gas chromatograph/flame ionization detector (GC-FID) was developed for hourly sampling and analysis of C 5 –C 15 hydrocarbons at remote locations. Samples are collected on an air-cooled multibed adsorbent trap for preconcentration of hydrocarbons in the target volatility range, specifically designed to minimize dead volume and enable rapid heating and sample flushing. Instrument control uses custom electronics designed to allow flexible autonomous operation at moderate cost, with automated data transfer and processing. The instrument has been deployed for over two years with samples collected mid-canopy from the Virginia Forest Laboratory located in the Pace research forest in central Virginia. We present here the design of the instrument itself, control electronics, and calibration and data analysis approaches to facilitate the development of similar systems by the atmospheric chemistry community. Detection limits of all species are in the range of a few to tens of ppt and the instrument is suitable for detection of a wide range of biogenic, lightly oxygenated, and anthropogenic (predominantly hydrocarbon) compounds. Data from calibrations are examined to provide understanding of instrument stability and quantify uncertainty. In this work, we present challenges and recommendations for future deployments, as well as suggested adaptions to decrease required maintenance and increase instrument up-time. The presented design is particularly suitable for long-term and remote deployment campaigns where access, maintenance, and transport of materials are difficult.