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Abstract Cupin dioxygenases such as salicylate 1,2‐dioxygense (SDO) perform aromatic C−C bond scission via a 3‐His motif tethered iron cofactor. Here, transient kinetics measurements are used to monitor the catalytic cycle of SDO by using a nitro‐substituted substrate analog, 3‐nitrogentisate. Compared to the natural substrate, the nitro group reduces the enzymatickcatby 500‐fold, thereby facilitating the detection and kinetic characterization of reaction intermediates. Sums and products of reciprocal relaxation times derived from kinetic measurements were found to be linearly dependent on O2concentration, suggesting reversible formation of two distinct intermediates. Dioxygen binding to the metal cofactor takes place with a forward rate of 5.9×103 M−1 s−1: two orders of magnitude slower than other comparable ring‐cleaving dioxygenses. Optical chromophore of the first intermediate is distinct from thein situgenerated SDO Fe(III)−O2⋅−complex but closer to the enzyme‐substrate precursor.more » « less
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A novel computational strategy is presented to calculate from first principles the coefficient of thermal expansion and the elastic constants of a material over meaningful intervals of temperature and pressure. This strategy combines a novel implementation of the quasiharmonic approximation to calculate the isothermal-isochoric linear and nonlinear elastic constants of a material, with elementary equations of nonlinear continuum mechanics. Our implementation of the quasiharmonic approximation relies on finite deformations, the use of nonprimitive supercells to describe a material, a recently proposed technique to calculate generalized mode Grüneisen parameters, and the numerical differentiation of the stress tensor to calculate both second- and third-order elastic constants. The combination of this method with nonlinear continuum mechanics is shown to yield accurate predictions of lattice parameters and linear elastic constants of a material over finite intervals of temperature and pressure, at the cost of calculating isothermal second- and third-order elastic constants for a single reference state. Here, the validity and limits of our novel methods are assessed by carrying out calculations of MgO based on classical interatomic potentials. To demonstrate potential, our methods are then used in conjunction with a density functional theory approach to calculate thermal expansion and elastic properties of silicon, lithium hydrate, and graphite.more » « less