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We examine the spectrum and quantum states of small lattices with cylindrical and toroidal topology subject to a scalar gauge potential that introduces a position dependent phase in the inter-site coupling. Equivalency of gauges assumed in infinite lattices is generally lost due to the periodic boundary conditions, and conditions that restore it are identified. We trace the impact of various system parameters including gauge choice, boundary conditions and inter-site coupling strengths, and an additional axial field. We find gauge dependent appearance of avoided crossings and persistent degeneracies, and we show their impact on the associated eigenstates. Smaller lattices develop prominent gaps in spectral lines associated with edge states, which are suppressed in the thermodynamic limit. Toroidal lattices have counterparts of most of the features observed in cylindrical lattices, but notably they display a transition from localization to delocalization determined by the relation between the field parameter and the number of lattice sites. 

Broadly neutralizing antibodies (bnAbs) that neutralize diverse variants of a particular virus are of considerable therapeutic interest. Recent advances have enabled us to isolate and engineer these antibodies as therapeutics, but eliciting them through vaccination remains challenging, in part due to our limited understanding of how antibodies evolve breadth. Here, we analyze the landscape by which an anti-influenza receptor binding site (RBS) bnAb, CH65, evolved broad affinity to diverse H1 influenza strains. We do this by generating an antibody library of all possible evolutionary intermediates between the unmutated common ancestor (UCA) and the affinity-matured CH65 antibody and measure the affinity of each intermediate to three distinct H1 antigens. We find that affinity to each antigen requires a specific set of mutations – distributed across the variable light and heavy chains – that interact non-additively (i.e., epistatically). These sets of mutations form a hierarchical pattern across the antigens, with increasingly divergent antigens requiring additional epistatic mutations beyond those required to bind less divergent antigens. We investigate the underlying biochemical and structural basis for these hierarchical sets of epistatic mutations and find that epistasis between heavy chain mutations and a mutation in the light chain at the V H -V L interface is essential for binding a divergent H1. Collectively, this is the first work to comprehensively characterize epistasis between heavy and light chain mutations and shows that such interactions are both strong and widespread. Together with our previous study analyzing a different class of anti-influenza antibodies, our results implicate epistasis as a general feature of antibody sequence-affinity landscapes that can potentiate and constrain the evolution of breadth. 

We consider ultracold atoms trapped in a toroidal trap with an azimuthal lattice for utility as a macroscopic simulator of quantum optics phenomena. We examine the dynamics induced by the adiabatic introduction of the lattice that serves to couple the normal modes as an analog of a laser field coupling electronic states. The system is found to display two distinct behaviors, manifest in the angular momentum—coherent oscillation and self-trapping—reminiscent of nonlinear dynamics yet not requiring interatomic interactions. The choice is set by the interplay of discrete parameters, the specific initial mode, and the periodicity of the lattice. However, rotation can cause continuous transition between the two regimes, causing periodic quenches and revivals in the oscillations as a function of the angular velocity. Curiously, the impact of rotation is determined entirely by the energy spectrum in the absence of the lattice, a feature that can be attributed to adiabaticity. We assess the effects of varying the lattice parameters and consider applications in rotation sensing.