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Abstract One of the major challenges in ensuring global food security is the ever‐changing biotic risk affecting the productivity and efficiency of the global food supply system. Biotic risks that threaten food security include pests and diseases that affect pre‐ and postharvest terrestrial agriculture and aquaculture. Strategies to minimize this risk depend heavily on plant and animal disease research. As data collected at high spatial and temporal resolutions become increasingly available, epidemiological models used to assess and predict biotic risks have become more accurate and, thus, more useful. However, with the advent of Big Data opportunities, a number of challenges have arisen that limit researchers’ access to complex, multi‐sourced, multi‐scaled data collected on pathogens, and their associated environments and hosts. Among these challenges, one of the most limiting factors is data privacy concerns from data owners and collectors. While solutions, such as the use of de‐identifying and anonymizing tools that protect sensitive information are recognized as effective practices for use by plant and animal disease researchers, there are comparatively few platforms that include data privacy by design that are accessible to researchers. We describe how the general thinking and design used for data sharing and analysis platforms can intrinsically address a number of these data privacy‐related challenges that are a barrier to researchers wanting to access data. We also describe how some of the data privacy concerns confronting plant and animal disease researchers are addressed by way of the GEMS informatics platform.