Search for: All records

Abstract The symbiosis between corals and dinoflagellates of the family Symbiodiniaceae is sensitive to environmental stress. The oxidative bleaching hypothesis posits that extreme temperatures lead to accumulation of photobiont-derived reactive oxygen species ROS, which exacerbates the coral environmental stress response (ESR). To understand how photosymbiosis modulates coral ESRs, these responses must be explored in hosts in and out of symbiosis. We leveraged the facultatively symbiotic coralAstrangia poculata, which offers an opportunity to uncouple the ESR across its two symbiotic phenotypes (brown, white). Colonies of both symbiotic phenotypes were exposed to three temperature treatments for 15 days: (i) control (static 18 °C), (ii) heat challenge (increasing from 18 to 30 °C), and (iii) cold challenge (decreasing from 18 to 4 °C) after which host gene expression was profiled. Cold challenged corals elicited widespread differential expression, however, there were no differences between symbiotic phenotypes. In contrast, brown colonies exhibited greater gene expression plasticity under heat challenge, including enrichment of cell cycle pathways involved in controlling photobiont growth. While this plasticity was greater, the genes driving this plasticity were not associated with an amplified environmental stress response (ESR) and instead showed patterns of a dampened ESR under heat challenge. This provides nuance to the oxidative bleaching hypothesis and suggests that, at least during the early onset of bleaching, photobionts reduce the host’s ESR under elevated temperatures inA. poculata. 

DNA has shown great biocompatibility, programmable mechanical properties, and precise structural addressabil- ity at the nanometer scale, rendering it a material for constructing versatile nanorobots for biomedical applica- tions. Here, we present the design principle, synthesis, and characterization of a DNA nanorobotic hand, called DNA NanoGripper, that contains a palm and four bendable fingers as inspired by naturally evolved human hands, bird claws, and bacteriophages. Each NanoGripper finger consists of three phalanges connected by three rotat- able joints that are bendable in response to the binding of other entities. NanoGripper functions are enabled and driven by the interactions between moieties attached to the fingers and their binding partners. We demonstrate that the NanoGripper can be engineered to effectively interact with and capture nanometer-scale objects, includ- ing gold nanoparticles, gold NanoUrchins, and SARS-CoV-2 virions. With multiple DNA aptamer nanoswitches programmed to generate a fluorescent signal that is enhanced on a photonic crystal platform, the NanoGripper functions as a highly sensitive biosensor that selectively detects intact SARS-CoV-2 virions in human saliva with a limit of detection of ~100 copies per milliliter, providing a sensitivity equal to that of reverse transcription quanti- tative polymerase chain reaction (RT-qPCR). Quantified by flow cytometry assays, we demonstrated that the NanoGripper-aptamer complex can effectively block viral entry into the host cells, suggesting its potential for in- hibiting virus infections. The design, synthesis, and characterization of a sophisticated nanomachine that can be tailored for specific applications highlight a promising pathway toward feasible and efficient solutions to the de- tection and potential inhibition of virus infections. 

Large Language Models (LLMs) have achieved remarkable success across a wide array of tasks. Due to the impressive planning and reasoning abilities of LLMs, they have been used as autonomous agents to do many tasks automatically. Recently, based on the development of using one LLM as a single planning or decision-making agent, LLM-based multi-agent systems have achieved considerable progress in complex problem-solving and world simulation. To provide the community with an overview of this dynamic field, we present this survey to offer an in-depth discussion on the essential aspects of multi-agent systems based on LLMs, as well as the challenges. Our goal is for readers to gain substantial insights on the following questions: What domains and environments do LLM-based multi-agents simulate? How are these agents profiled and how do they communicate? What mechanisms contribute to the growth of agents' capacities? For those interested in delving into this field of study, we also summarize the commonly used datasets or benchmarks for them to have convenient access. To keep researchers updated on the latest studies, we maintain an open-source GitHub repository, dedicated to outlining the research on LLM-based multi-agent systems. 

This chapter documents the primary shipboard procedures and methods employed by various operational and scientific groups during the offshore and onshore phases of International Ocean Discovery Program (IODP) Expedition 389. Methods for postexpedition research conducted on Expedition 389 samples and data will be described in individual scientific contributions to be published after the Onshore Science Party (OSP). Detailed drilling and engineering operations are described in Operations in each site chapter. 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025). Summary operational information for Holes M0096A–M0096F is provided in Table T1. All times stated are in Hawaiian Standard Time (HST). 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all Expedition 389 sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Site M0101 is provided in Table T1. All times stated are in Hawaiian Standard Time (HST). 

Our understanding of the mechanisms controlling eustatic sea level and global climate changes has been hampered by a lack of appropriate fossil coral records over the last 500 ky, particularly into and out of the glacial periods. This problem was addressed by International Ocean Discovery Program Expedition 389, which drilled a unique succession of Hawaiian drowned coral reefs now at 110–1300 meters below sea level (mbsl). The four objectives are to investigate (1) the timing, rate, and amplitude of sea level variability to examine cryosphere and geophysical processes, including the assessment of abrupt sea level change events; (2) the processes that determine changes in mean and high-frequency (seasonal–interannual) climate variability from times with different boundary conditions (e.g., ice sheet size, pCO2, and solar forcing); (3) the response of coral reef systems to abrupt sea level and climate changes; and (4) the variations through space and time of the subsidence and the volcanic evolution of the island. To achieve these objectives, 35 holes at 16 sites in water depths ranging 131.9–1241.8 mbsl were drilled during the expedition. A total of 425 m of core was recovered, comprising reef (83%) and volcanic (17%) material. Average core recoveries were 66%, with recoveries >90% in numerous intervals characterized by very well preserved coralgal and microbialite frameworks. Some science-critical shallow sites were not drilled due to a failure to secure permits to operate in Hawaiian state waters. Furthermore, apart from one site, the target penetration depths were not achieved. Preliminary radiometric dates indicate that the recovered reef deposits are from 488 to 13 ka in age. The Onshore Science Party took place in February 2024. Cores were computed tomography (CT) scanned and then opened and hyperspectral scanned and described. Standard measurements were made, and samples were taken for postcruise research. Preliminary assessment of the age and quality of the reef and volcanic cores suggest that many of the expedition objectives will be met. 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Holes M0097A–M0097D is provided in Table T1. All times stated are in Hawaiian Standard Time (HST).