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Abstract Estuarine total alkalinity (TA), which buffers against acidification, is temporally and spatially variable and regulated by complex, interacting hydrologic and biogeochemical processes. During periods of net evaporation (drought), the Mission-Aransas Estuary (MAE) of the northwestern Gulf of Mexico experienced TA losses beyond what can be attributed to calcification. The contribution of sedimentary oxidation of reduced sulfur to the TA loss was examined in this study. Water column samples were collected from five stations within MAE and analyzed for salinity, TA, and calcium ion concentrations. Sediment samples from four of these monitoring stations and one additional station within MAE were collected and incubated between 2018 and 2021. TA, calcium, magnesium, and sulfate ion concentrations were analyzed for these incubations. Production of sulfate along with TA consumption (or production) beyond what can be attributed to calcification (or carbonate dissolution) was observed. These results suggest that oxidation of reduced sulfur consumed TA in MAE during droughts. We estimate that the upper limit of TA consumption due to reduced sulfur oxidation can be as much as 4.60 × 10⁸ mol day⁻¹in MAE. This biogeochemical TA sink may be present in other similar subtropical, freshwater-starved estuaries around the world. 

Abstract Water quality parameters from 2000 to 2020 were used to identify the spatial and temporal sulfate variations in estuaries of the northwestern Gulf of Mexico. Sulfate enrichment relative to conservative mixing was found to be associated with a low river discharge period from 2012 to 2014 in all estuaries. Based on reaction stoichiometry, sedimentary sulfide oxidation holds significant potential for reducing the alkalinity in estuarine waters. However, during this extreme drought, alkalinity enrichment was also occasionally observed in some of the southern estuaries along with sulfate enrichment, and when alkalinity depletion occurred, the magnitude of depletion was usually much less than what would be expected based on sulfide oxidation alone. This discrepancy can be partially explained by carbonate dissolution and other proton removal pathways (e.g., Fe‐oxide dissolution), and by the uncertainties in the model used to estimate alkalinity enrichment/depletion. Under a changing climate, the close coupling between river discharge variation and estuarine sulfate dynamics will significantly impact estuarine carbonate chemistry.