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  1. Rokas, Antonis (Ed.)
    ABSTRACT The oomycete Phytophthora capsici is a destructive pathogen of a wide range of vegetable hosts, especially peppers and cucurbits. A 94.17-Mb genome assembly was constructed using PacBio and Illumina data and annotated with support from transcriptome sequencing (RNA-Seq) reads. 
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  2. Summary

    Understanding the genetic and physiological basis of abiotic stress tolerance under field conditions is key to varietal crop improvement in the face of climate variability. Here, we investigate dynamic physiological responses to water stressin silicoand their relationships to genotypic variation in hydraulic traits of cotton (Gossypium hirsutum), an economically important species for renewable textile fiber production.

    In conjunction with an ecophysiological process‐based model, heterogeneous data (plant hydraulic traits, spatially‐distributed soil texture, soil water content and canopy temperature) were used to examine hydraulic characteristics of cotton, evaluate their consequences on whole plant performance under drought, and explore potential genotype × environment effects.

    Cotton was found to have R‐shaped hydraulic vulnerability curves (VCs), which were consistent under drought stress initiated at flowering. Stem VCs, expressed as percent loss of conductivity, differed across genotypes, whereas root VCs did not. Simulation results demonstrated how plant physiological stress can depend on the interaction between soil properties and irrigation management, which in turn affect genotypic rankings of transpiration in a time‐dependent manner.

    Our study shows how a process‐based modeling framework can be used to link genotypic variation in hydraulic traits to differential acclimating behaviors under drought.

     
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  3. Abstract

    The hydrophobic cuticle of plant shoots serves as an important interaction interface with the environment. It consists of the lipid polymer cutin, embedded with and covered by waxes, and provides protection against stresses including desiccation, UV radiation, and pathogen attack. Bulliform cells form in longitudinal strips on the adaxial leaf surface, and have been implicated in the leaf rolling response observed in drought‐stressed grass leaves. In this study, we show that bulliform cells of the adult maize leaf epidermis have a specialized cuticle, and we investigate its function along with that of bulliform cells themselves. Bulliform cells displayed increased shrinkage compared to other epidermal cell types during dehydration of the leaf, providing a potential mechanism to facilitate leaf rolling. Analysis of natural variation was used to relate bulliform strip patterning to leaf rolling rate, providing further evidence of a role for bulliform cells in leaf rolling. Bulliform cell cuticles showed a distinct ultrastructure with increased cuticle thickness compared to other leaf epidermal cells. Comparisons of cuticular conductance between adaxial and abaxial leaf surfaces, and between bulliform‐enriched mutants versus wild‐type siblings, showed a correlation between elevated water loss rates and presence or increased density of bulliform cells, suggesting that bulliform cuticles are more water‐permeable. Biochemical analysis revealed altered cutin composition and increased cutin monomer content in bulliform‐enriched tissues. In particular, our findings suggest that an increase in 9,10‐epoxy‐18‐hydroxyoctadecanoic acid content, and a lower proportion of ferulate, are characteristics of bulliform cuticles. We hypothesize that elevated water permeability of the bulliform cell cuticle contributes to the differential shrinkage of these cells during leaf dehydration, thereby facilitating the function of bulliform cells in stress‐induced leaf rolling observed in grasses.

     
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  4. Abstract

    Breeding programs for wheat (Triticum aestivumL.) and other crops require one or more generations of seed increase before replicated trials can be sown to assess yield. Extensive phenotyping at this stage is challenging because of the small sizes of plots and large numbers of lines under evaluation, and therefore, breeders typically rely on visual selection to promote lines to yield evaluation. Aerial high‐throughput phenotyping (HTP) enables the rapid acquisition of traits that may be useful for selection among early generation lines. With the objective of assessing the potential for aerial measurements recorded on seed increase plots to improve indirect selection for grain yield (GY), two sets of 1,008 early generation bread wheat breeding lines were sown both as replicated yield trials (YTs) and as small, unreplicated plots (SPs) at the International Maize and Wheat Improvement Center during two breeding cycles. Normalized difference vegetation indices (NDVI) collected with an unmanned aerial vehicle (UAV) in the SPs were observed to be heritable and moderately correlated with GY assessed in YTs. Furthermore, NDVI was more predictive of GY than univariate genomic selection (GS), with still higher overall predictive abilities from multitrait approaches. A related experiment showed that selection based on NDVI would have outperformed visual selection, though this approach would have driven a directional response in phenology because of confounding between phenology, NDVI, and GY. A restricted selection index was proposed to address this issue. These results provide a promising outlook for the use of aerial HTP to improve selection at the early generation, seed‐limited stages of breeding programs.

     
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  5. Abstract

    Sweet corn (Zea maysL.) is highly consumed in the United States, but does not make major contributions to the daily intake of carotenoids (provitamin A carotenoids, lutein and zeaxanthin) that would help in the prevention of health complications. A genome‐wide association study of seven kernel carotenoids and twelve derivative traits was conducted in a sweet corn inbred line association panel ranging from light to dark yellow in endosperm color to elucidate the genetic basis of carotenoid levels in fresh kernels. In agreement with earlier studies of maize kernels at maturity, we detected an association of β‐carotene hydroxylase(crtRB1) with β‐carotene concentration andlycopene epsilon cyclase(lcyE) with the ratio of flux between the α‐ and β‐carotene branches in the carotenoid biosynthetic pathway. Additionally, we found that 5% or less of the evaluated inbred lines possessing theshrunken2(sh2) endosperm mutation had the most favorablelycEallele orcrtRB1haplotype for elevating β‐branch carotenoids (β‐carotene and zeaxanthin) or β‐carotene, respectively. Genomic prediction models with genome‐wide markers obtained moderately high predictive abilities for the carotenoid traits, especially lutein, and outperformed models with less markers that targeted candidate genes implicated in the synthesis, retention, and/or genetic control of kernel carotenoids. Taken together, our results constitute an important step toward increasing carotenoids in fresh sweet corn kernels.

     
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