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St Helena Bay (SHB), a retentive zone in the productive southern Benguela Upwelling System off western South Africa, experiences seasonal hypoxia and episodic anoxic events that threaten local fisheries. To understand the drivers of oxygen variability in SHB, we queried 25 years of dissolved oxygen (DO) observations alongside high‐resolution wind and hydrographic data, and dynamical data from a high‐resolution model. At 70 m in SHB (mid‐bay), upwelling‐favorable winds in spring drove replenishment of cold, oxygenated water. Hypoxia developed in summer, becoming most severe in autumn. Bottom waters in autumn were replenished with warmer, less oxygenated water than in spring—suggesting a seasonal change in source waters upwelled into the bay. Downwelling and deep mixing in winter ventilated mid‐bay bottom waters, which reverted to hypoxic conditions during wind relaxations and reversals. In the nearshore (20 m), hypoxia occurred specifically during periods of upwelling‐favorable wind stress and was most severe in autumn. Using a statistical model, we extended basic hydrographic observations to nitrate and DO concentrations and developed metrics to identify the accumulation of excess nutrients on the shelf and nitrogen‐loss to denitrification, both of which were most prominent in autumn. A correspondence of the biogeochemical properties of hypoxic waters at 20 m to those at 70 m implicates the latter as the source waters upwelled inshore in autumn. We conclude that wind‐driven upwelling drives the replenishment of respired bottom waters in SHB with oxygenated waters, noting that less‐oxygenated water is imported later in the upwelling season, which exacerbates hypoxia. 

The nitrogen (N) isotope composition (δ15N) of cold-water corals is a promising proxy for reconstructing past ocean N cycling, as a strong correlation was found between the δ15N of the organic nitrogen preserved in coral skeletons and the δ15N of particulate organic matter exported from the surface ocean. However, a large offset of 8 ‰–9 ‰ between the δ15N recorded by the coral and that of exported particulate organic matter remains unexplained. The 8 ‰–9 ‰ offset may signal a higher trophic level of coral dietary sources, an unusually large trophic isotope effect or a biosynthetic δ15N offset between the coral's soft tissue and skeletal organic matter, or some combinations of these factors. To understand the origin of the offset and further validate the proxy, we investigated the trophic ecology of the asymbiotic scleractinian cold-water coral Balanophyllia elegans, both in a laboratory setting and in its natural habitat. A long-term incubation experiment of B. elegans fed on an isotopically controlled diet yielded a canonical trophic isotope effect of 3.0 ± 0.1 ‰ between coral soft tissue and the Artemia prey. The trophic isotope effect was not detectably influenced by sustained food limitation. A long N turnover of coral soft tissue, expressed as an e-folding time, of 291 ± 15 d in the well-fed incubations indicates that coral skeleton δ15N is not likely to track subannual (e.g., seasonal) variability in diet δ15N. Specimens of B. elegans from the subtidal zone near San Juan Channel (WA, USA) revealed a modest difference of 1.2 ± 0.6 ‰ between soft tissue and skeletal δ15N. The δ15N of the coral soft tissue was 12.0 ± 0.6 ‰, which was ∼6 ‰ higher than that of suspended organic material that was comprised dominantly of phytoplankton – suggesting that phytoplankton is not the primary component of B. elegans' diet. An analysis of size-fractionated net tow material suggests that B. elegans fed predominantly on a size class of zooplankton ≥500 µm, implicating a two-level trophic transfer between phytoplankton material and coral tissue. These results point to a feeding strategy that may result in an influence of the regional food web structure on the cold-water coral δ15N. This factor should be taken into consideration when applying the proxy to paleo-oceanographic studies of ocean N cycling. 

Abstract The southern Benguela upwelling system (SBUS) supports high rates of primary productivity that sustain important commercial fisheries. The exceptional fertility of this system is reportedly fueled not only by upwelled nutrients but also by nutrients regenerated on the broad and shallow continental shelf. We measured nutrient concentrations and the nitrogen (N) and oxygen (O) isotope ratios (δ¹⁵N and δ¹⁸O) of nitrate along four zonal lines in the SBUS in late summer and early winter to evaluate the extent to which regenerated nutrients augment the upwelled nutrient reservoir originating offshore. During summer upwelling, a decrease in on‐shelf nitrate δ¹⁸O revealed that 0–48% of the subsurface nutrients derived from in situ remineralization. The nitrate regenerated on‐shelf in the more quiescent winter (0–63% of total nitrate) extended further offshore along the mid‐shelf. A shoreward increase in subsurface nitrate δ¹⁵N and a greater N deficit in on‐shelf bottom waters further indicated N loss to benthic (and at times, watercolumn) denitrification coincident with the on‐shelf remineralization. Our data show that remineralized nutrients get trapped on the SBUS shelf in summer through early winter, enhancing the nutrient pool that can be upwelled to support surface production. We hypothesize that this process is aided by a number of equatorward‐flowing hydrographic fronts that impede the lateral exchange of surface waters. The extent to which nutrients remain trapped on the shelf has implications for the occurrence of hypoxic events in the SBUS.