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As environments are rapidly reshaped due to climate change, phenotypic plasticity plays an important role in the ability of organisms to persist and is considered an especially important acclimatization mechanism for long-lived sessile organisms such as reef-building corals. Often, this ability of a single genotype to display multiple phenotypes depending on the environment is modulated by changes in gene expression, which can vary in response to environmental changes via two mechanisms: baseline expression and expression plasticity. We used transcriptome-wide expression profiling of eleven genotypes of common-gardenedAcropora cervicornisto explore genotypic variation in the expression response to thermal and acidification stress, both individually and in combination. We show that the combination of these two stressors elicits a synergistic gene expression response, and that both baseline expression and expression plasticity in response to stress show genotypic variation. Additionally, we demonstrate that frontloading of a large module of coexpressed genes is associated with greater retention of algal symbionts under combined stress. These results illustrate that variation in the gene expression response of individuals to climate change stressors can persist even when individuals have shared environmental histories, affecting their performance under future climate change scenarios. 

Aquatic ecosystems are increasingly threatened by multiple human-induced stressors associated with climate and anthropogenic changes, including warming, nutrient pollution, harmful algal blooms, hypoxia, and changes in CO 2 and pH. These stressors may affect systems additively and synergistically but may also counteract each other. The resultant ecosystem changes occur rapidly, affecting both biotic and abiotic components and their interactions. Moreover, the complexity of interactions increases as one ascends the food web due to differing sensitivities and exposures among life stages and associated species interactions, such as competition and predation. There is also a need to further understand nontraditional food web interactions, such as mixotrophy, which is the ability to combine photosynthesis and feeding by a single organism. The complexity of these interactions and nontraditional food webs presents challenges to ecosystem modeling and management. Developing ecological models to understand multistressor effects is further challenged by the lack of sufficient data on the effects of interactive stressors across different trophic levels and the substantial variability in climate changes on regional scales. To obtain data on a broad suite of interactions, a nested set of experiments can be employed. Modular, coupled, multitrophic level models will provide the flexibility to explore the additive, amplified, propagated, antagonistic, and/or reduced effects that can emerge from the interactions of multiple stressors. Here, the stressors associated with eutrophication and climate change are reviewed, and then example systems from around the world are used to illustrate their complexity and how model scenarios can be used to examine potential future changes. 

Knowledge of multi-stressor interactions and the potential for tradeoffs among tolerance traits is essential for developing intervention strategies for the conservation and restoration of reef ecosystems in a changing climate. Thermal extremes and acidification are two major co-occurring stresses predicted to limit the recovery of vital Caribbean reef-building corals. Here, we conducted an aquarium-based experiment to quantify the effects of increased water temperatures and p CO 2 individually and in concert on 12 genotypes of the endangered branching coral Acropora cervicornis, currently being reared and outplanted for large-scale coral restoration. Quantification of 12 host, symbiont and holobiont traits throughout the two-month-long experiment showed several synergistic negative effects, where the combined stress treatment often caused a greater reduction in physiological function than the individual stressors alone. However, we found significant genetic variation for most traits and positive trait correlations among treatments indicating an apparent lack of tradeoffs, suggesting that adaptive evolution will not be constrained. Our results suggest that it may be possible to incorporate climate-resistant coral genotypes into restoration and selective breeding programmes, potentially accelerating adaptation.