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  1. Abstract Aim

    Mesophotic ecosystems, found at the limit of light penetration in the ocean, are rich in biodiversity and harbour unique ecological communities. However, they remain among the least studied habitat zones on earth due to the high costs and technological limitations. Here, we characterize mesophotic communities in two marine reserves across a range of habitat types, depths and temperatures using submersible technologies, with the goal of understanding the processes that structure these communities across biogeographical regions.


    The Bay of La Paz and the Revillagigedo Archipelago, Mexico.


    Fish and algal species.


    We used a small and inexpensive remotely operated vehicle (ROV) to conduct roving‐swim surveys of major habitat types in depths from 12 to 94 m. With the resulting binary data on the presence of fish species, we used generalized linear mixed models and canonical correspondence analysis to determine whether biogenic habitat, depth and/or temperature best explained species richness and community structure across reef and non‐reef substrate.


    We identified 72 species or genera, including new depth records for nine fish species and a new geographical record for one fish species. Our surveys included large undocumented rhodolith beds (free‐living coralline algae) and mesophotic algal communities, in addition to diverse communities of soft corals and sponges. Fish species richness was positively associated with rocky substrate and warmer water, and reef fish communities differed significantly by depth, temperature and biogenic habitat.

    Main conclusion

    Our results highlight the importance of biogenic habitat in structuring communities across gradients of depth and temperature. We also demonstrate the effectiveness of a small and economical ROV for conducting mesophotic surveys in remote regions. Our methods and results provide a framework that can be used to greatly increase the biogeographical and taxonomic scope of mesophotic research, especially for readily identifiable taxa such as fish.

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  2. The severely degraded condition of many coral reefs worldwide calls for active interventions to rehabilitate their physical and biological structure and function, in addition to effective management of fisheries and no‐take reserves. Rehabilitation efforts to stabilize reef substratum sufficiently to support coral growth have been limited in size. We documented a large coral reef rehabilitation in Indonesia aiming to restore ecosystem functions by increasing live coral cover on a reef severely damaged by blast fishing and coral mining. The project deployed small, modular, open structures to stabilize rubble and to support transplanted coral fragments. Between 2013 to 2015, approximately 11,000 structures covering 7,000 m2were deployed over 2 ha of a reef at a cost of US$174,000. Live coral cover on the structures increased from less than 10% initially to greater than 60% depending on depth, deployment date and location, and disturbances. The mean live coral cover in the rehabilitation area in October 2017 was higher than reported for reefs in many other areas in the Coral Triangle, including marine protected areas, but lower than in the no‐take reference reef. At least 42 coral species were observed growing on the structures. Surprisingly, during the massive coral bleaching in other regions during the 2014–2016 El Niño–Southern Oscillation event, bleaching in the rehabilitation area was less than 5% cover despite warm water (≥30°C). This project demonstrates that coral rehabilitation is achievable over large scales where coral reefs have been severely damaged and are under continuous anthropogenic disturbances in warming waters.

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