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Creators/Authors contains: "Kyle, A"

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  1. Abstract Multiple-use conflicts of the marine benthos (“bottom-use conflicts”) are increasing as humans expand use of the coastal zone. These conflicts necessitate balanced policies that consider the economic and ecological benefits of different bottom uses. In the Virginia coastal lagoons on the US east coast, there is a potential bottom-use conflict between hard clam (Mercenaria mercenaria) aquaculture and seagrass (Zostera marina) meadows. We leveraged two decades (2001–2021) of aerial imagery and environmental data to quantify historic trends in bottom use, assess the realized niche of seagrass and clam aquaculture across depth, sand fraction, root mean square (RMS) velocity, fetch, and sea surface temperature (SST) anomaly, and used random forest models to predict the potential extent of seagrass, clam aquaculture, and bottom-use conflict. We found growth in the coverage of both seagrass (+ 3373%) and clam aquaculture (+ 140%) over the past 20 years with a corresponding increase in bottom-use conflict (+ 2579%), though conflict area remained relatively minor. Seagrass occurred in deeper areas with higher fetch, a higher frequency of SST anomalies, lower sand fraction, and similar RMS velocities to areas containing clam aquaculture. Our random forest models predicted potential for the expansion of seagrass (+ 62%) and clam aquaculture (+ 263.9%) with a relatively small area of predicted spatial overlap (12.3%) under current conditions. These results illustrate how species distribution models can help us understand the spatial impacts of aquaculture on natural ecosystems and inform managers and policy makers to create objective policies that balance socioeconomic and ecologic needs. 
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    Free, publicly-accessible full text available November 1, 2026
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  5. ABSTRACT The success of butterflies and moths is tightly linked to the origin of scales within the group. A long-standing hypothesis postulates that scales are homologous to the well-described mechanosensory bristles found in the fruit fly Drosophila melanogaster, as both derive from an epithelial precursor. Previous histological and candidate gene approaches identified parallels in genes involved in scale and bristle development. Here, we provide developmental and transcriptomic evidence that the differentiation of lepidopteran scales derives from the sensory organ precursor (SOP). Live imaging in lepidopteran pupae shows that SOP cells undergo two asymmetric divisions that first abrogate the neurogenic lineage, and then lead to a differentiated scale precursor and its associated socket cell. Single-nucleus RNA sequencing using early pupal wings revealed differential gene expression patterns that mirror SOP development, suggesting a shared developmental program. Additionally, we recovered a newly associated gene, the transcription factor pdm3, involved in the proper differentiation of butterfly wing scales. Altogether, these data open up avenues for understanding scale type specification and development, and illustrate how single-cell transcriptomics provide a powerful platform for understanding evolution of cell types. 
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    Free, publicly-accessible full text available March 1, 2026
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  7. Abstract The$$^{90}$$ 90 Zr(p,$$\gamma $$ γ )$$^{91}$$ 91 Nb reaction is one of the important reactions in the$$A\approx 90$$ A 90 mass region and part of the nucleosynthesis path responsible for production of$$^{92}$$ 92 Mo during the$$\gamma $$ γ -process. Discrepant data in the literature provide a cross section that varies up to 30% within the Gamow window for the$$^{90}$$ 90 Zr(p,$$\gamma $$ γ )$$^{91}$$ 91 Nb reaction. Thus, the cross section measurements of$$^{90}$$ 90 Zr(p,$$\gamma $$ γ )$$^{91}$$ 91 Nb reaction were revisited using the$$\gamma $$ γ -summing technique. The results are consistent with the lower-value cross sections found in the literature. Based on the new data an updated reaction rate for$$^{90}$$ 90 Zr(p,$$\gamma $$ γ )$$^{91}$$ 91 Nb is provided that is up to 20% higher than that obtained from thenon-smokercode. 
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  8. Meyer, Rachel (Ed.)
    Abstract The Pismo clam, Tivela stultorum, is an ecologically and economically important species inhabiting sandy beaches and subtidal zones in central and southern California, USA, and northern Baja California, Mexico. This long-lived venerid clam species is of great management, cultural and conservation interest in California where it was harvested for centuries by indigenous people and then nearly extirpated by intense commercial and recreational overfishing in the mid-1900s. A recreational fishery continues today in California; however, T. stultorum faces pressure from poaching, overharvest, and the loss of sandy beaches from rising sea levels and beach erosion. Understanding the susceptibility and resilience of Pismo clams to these pressures is essential for their conservation. We used Pacific Biosciences HiFi long sequencing reads and Dovetail Omni-C proximity reads to assemble a highly contiguous genome of 763 Mb. The genome had a contig N50 of 13 Mb and a scaffold N50 of 38 Mb with a BUSCO completeness score of 95%. Most of the genome sequences (96%) were contained in 19 scaffolds at least 10MB long, consistent with prior evidence that venerid clam genomes are composed of 19 autosomes. This reference genome will enable a more complete understanding of the ecology and evolutionary dynamics of T. stultorum via population genomic analyses, which will help assess risks from climate, fishing, environmental change, and susceptibilities due to life history. Our goal is to better support the continued recovery, informed management and conservation, and future persistence of T. stultorum, a long-lived and highly valued clam species. 
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    Free, publicly-accessible full text available February 19, 2026