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  1. Ion transport within saturated porous media is an intricate process in which efficient ion delivery is desired in many engineering problems. However, controlling the behavior of ion transport proves challenging, as ion transport is influenced by a variety of driving mechanisms, which requires a systematic understanding. Herein, we study a coupled advection–diffusion–electromigration system for controlled ion transport within porous media using the scaling analysis. Using the Lattice–Boltzmann–Poisson method, we establish a transport regime classification based on an Advection Diffusion Index (ADI) and a novel Electrodiffusivity Index (EDI) for a two-dimensional (2D) microchannel model under various electric potentials, pressure gradients, and concentration conditions. The resulting transport regimes can be well controlled by changing the applied electric potential, the pressure field, and the injected ions concentration. Furthermore, we conduct numerical simulations in a synthetic 2D porous media and an x-ray microcomputed tomography sandstone image to validate the prevailing transport regime. The simulation results highlight that the defined transport regime observed in our simple micromodel domain is also observed in the synthetic two- and three-dimensional domains, but the boundary between each transport regime differs depending on the variation of the pore size within a given domain. Consequently, the proposed ADI and EDI emerge as dimensionless indicators for controlled ion transport. Overall, our proof-of-concept for ion transport control in porous media is demonstrated under advection–diffusion–electromigration transport, demonstrating the richness of transport regimes that can develop and provide future research directions for subsurface engineering applications.

     
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    Free, publicly-accessible full text available June 1, 2025
  2. Abstract

    Atmospheric rivers (ARs) reaching high-latitudes in summer contribute to the majority of climatological poleward water vapor transport into the Arctic. This transport has exhibited long term changes over the past decades, which cannot be entirely explained by anthropogenic forcing according to ensemble model responses. Here, through observational analyses and model experiments in which winds are adjusted to match observations, we demonstrate that low-frequency, large-scale circulation changes in the Arctic play a decisive role in regulating AR activity and thus inducing the recent upsurge of this activity in the region. It is estimated that the trend in summertime AR activity may contribute to 36% of the increasing trend of atmospheric summer moisture over the entire Arctic since 1979 and account for over half of the humidity trends in certain areas experiencing significant recent warming, such as western Greenland, northern Europe, and eastern Siberia. This indicates that AR activity, mostly driven by strong synoptic weather systems often regarded as stochastic, may serve as a vital mechanism in regulating long term moisture variability in the Arctic.

     
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  3. Abstract

    Nearly half of cancer patients who receive standard-of-care treatments fail to respond to their first-line chemotherapy, demonstrating the pressing need for improved methods to select personalized cancer therapies. Low-coherence digital holography has the potential to fill this need by performing dynamic contrast OCT on living cancer biopsies treated ex vivo with anti-cancer therapeutics. Fluctuation spectroscopy of dynamic light scattering under conditions of holographic phase stability captures ultra-low Doppler frequency shifts down to 10 mHz caused by light scattering from intracellular motions. In the comparative preclinical/clinical trials presented here, a two-species (human and canine) and two-cancer (esophageal carcinoma and B-cell lymphoma) analysis of spectral phenotypes identifies a set of drug response characteristics that span species and cancer type. Spatial heterogeneity across a centimeter-scale patient biopsy sample is assessed by measuring multiple millimeter-scale sub-samples. Improved predictive performance is achieved for chemoresistance profiling by identifying red-shifted sub-samples that may indicate impaired metabolism and removing them from the prediction analysis. These results show potential for using biodynamic imaging for personalized selection of cancer therapy.

     
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  4. Abstract

    Electrokinetic in-situ recovery is an alternative to conventional mining, relying on the application of an electric potential to enhance the subsurface flow of ions. Understanding the pore-scale flow and ion transport under electric potential is essential for petrophysical properties estimation and flow behavior characterization. The governing physics of electrokinetic transport is electromigration and electroosmotic flow, which depend on the electric potential gradient, mineral occurrence, domain morphology (tortuosity and porosity, grain size and distribution, etc.), and electrolyte properties (local pH distribution and lixiviant type and concentration, etc.). Herein, mineral occurrence and its associated zeta potential are investigated for EK transport. The new Ek model which is designed to solve the EK flow in complex porous media in a highly parallelizable manner includes three coupled equations: (1) Poisson equation, (2) Nernst–Planck equation, and (3) Navier–Stokes equation. These equations were solved using the lattice Boltzmann method within X-ray computed microtomography images. The proposed model is validated against COMSOL multiphysics in a two-dimensional microchannel in terms of fluid flow behavior when the electrical double layer is both resolvable and unresolvable. A more complex chalcopyrite-silica system is then obtained by micro-CT scanning to evaluate the model performance. The effects of mineral occurrence, zeta potential, and electric potential on the three-dimensional chalcopyrite-silica system were evaluated. Although the positive zeta potential of chalcopyrite can induce a flow of ferric ion counter to the direction of electromigration, the net effect is dependent on the occurrence of chalcopyrite. However, the ion flux induced by electromigration was the dominant transport mechanism, whereas advection induced by electroosmosis made a lower contribution. Overall, a pore-scale EK model is proposed for direct simulation on pore-scale images. The proposed model can be coupled with other geochemical models for full physicochemical transport simulations. Meanwhile, electrokinetic transport shows promise as a human-controllable technique because the electromigration of ions and the applied electric potential can be easily controlled externally.

    Graphical abstract 
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    Free, publicly-accessible full text available December 1, 2024
  5. Free, publicly-accessible full text available April 1, 2025
  6. JavaScript has become the most popular programming language for web front-end development. With such popularity, there is a great demand for thorough testing of client-side JavaScript web applications. In this paper, we present a novel approach to concolic testing of front-end JavaScript web applications. This approach leverages widely used JavaScript testing frameworks such as Jest and Puppeteer and conducts concolic execution on JavaScript functions in web applications for unit testing. The seamless integration of concolic testing with these testing frameworks allows injection of symbolic variables within the native execution context of a JavaScript web function and precise capture of concrete execution traces of the function under test. Such concise execution traces greatly improve the effectiveness and efficiency of the subsequent symbolic analysis for test generation. We have implemented our approach on Jest and Puppeteer. The application of our Jest implementation on Metamask, one of the most popular Crypto wallets, has uncovered 3 bugs and 1 test suite improvement, whose bug reports have all been accepted by Metamask developers on Github. We also applied our Puppeteer implementation to 21 Github projects and detected 4 bugs. 
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  7. JavaScript (JS) has evolved into a versatile and popular programming language for not only the web, but also a wide range of server-side and client-side applications. Effective, efficient, and easy-to-use testing techniques for JS scripts are in great demand. In this paper, we introduce a holistic approach to applying concolic testing to JS scripts in-situ, i.e., JS scripts are executed in their native environments as part of concolic execution and test cases generated are directly replayed in these environments. We have implemented this approach in the context of Node.js, a JS runtime built on top of Chrome’s V8 JS engine, and evaluated its effectiveness and efficiency through application to 180 Node.js libraries with heavy use of string operations. For 85% of these libraries, it achieved statement coverage ranging between 75% and 100%, a close match in coverage with the hand-crafted unit test suites accompanying their NPM releases. Our approach detected numerous exceptions in these libraries. We analyzed the exception reports for 12 representative libraries and found 6 bugs in these libraries, 4 of which are previously undetected. The bug reports and patches that we filed for these bugs have been accepted by the library developers on GitHub. 
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  8. Surface-assisted, tile-based DNA self-assembly is a powerful method to construct large, two-dimensional (2D) nanoarrays. To further increase the structural complexity, one idea is to incorporate different types of tiles into one assembly system. However, different tiles have different adsorption strengths to the solid surface. The differential adsorptions make it difficult to control the effective molar ratio between different DNA tile concentrations on the solid surface, leading to assembly failure. Herein, we propose a solution to this problem by engineering the tiles with comparable molecular weights while maintaining their architectures. As a demonstration, we have applied this strategy to successfully assemble binary DNA 2D arrays out of very different tiles. We expect that this strategy would facilitate assembly of other complicated nanostructures as well. 
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  9. Abstract

    Allogeneic Vγ9Vδ2 (Vδ2) T cells have emerged as attractive candidates for developing cancer therapy due to their established safety in allogeneic contexts and inherent tumor-fighting capabilities. Nonetheless, the limited clinical success of Vδ2 T cell-based treatments may be attributed to donor variability, short-lived persistence, and tumor immune evasion. To address these constraints, we engineer Vδ2 T cells with enhanced attributes. By employing CD16 as a donor selection biomarker, we harness Vδ2 T cells characterized by heightened cytotoxicity and potent antibody-dependent cell-mediated cytotoxicity (ADCC) functionality. RNA sequencing analysis supports the augmented effector potential of Vδ2 T cells derived from CD16 high (CD16Hi) donors. Substantial enhancements are further achieved through CAR and IL-15 engineering methodologies. Preclinical investigations in two ovarian cancer models substantiate the effectiveness and safety of engineered CD16HiVδ2 T cells. These cells target tumors through multiple mechanisms, exhibit sustained in vivo persistence, and do not elicit graft-versus-host disease. These findings underscore the promise of engineered CD16HiVδ2 T cells as a viable therapeutic option for cancer treatment.

     
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    Free, publicly-accessible full text available December 1, 2024
  10. Wei, Xue-Xin (Ed.)

    Machine learning models have difficulty generalizing to data outside of the distribution they were trained on. In particular, vision models are usually vulnerable to adversarial attacks or common corruptions, to which the human visual system is robust. Recent studies have found that regularizing machine learning models to favor brain-like representations can improve model robustness, but it is unclear why. We hypothesize that the increased model robustness is partly due to the low spatial frequency preference inherited from the neural representation. We tested this simple hypothesis with several frequency-oriented analyses, including the design and use of hybrid images to probe model frequency sensitivity directly. We also examined many other publicly available robust models that were trained on adversarial images or with data augmentation, and found that all these robust models showed a greater preference to low spatial frequency information. We show that preprocessing by blurring can serve as a defense mechanism against both adversarial attacks and common corruptions, further confirming our hypothesis and demonstrating the utility of low spatial frequency information in robust object recognition.

     
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