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  1. Electron microscopy images of carbon nanotube (CNT) forests are difficult to segment due to the long and thin nature of the CNTs; density of the CNT forests resulting in CNTs touching, crossing, and occluding each other; and low signal-to-noise ratio electron microscopy imagery. In addition, due to image complexity, it is not feasible to prepare training segmentation masks. In this paper, we propose CNTSegNet, a dual loss, orientation-guided, self-supervised, deep learning network for CNT forest segmentation in scanning electron microscopy (SEM) images. Our training labels consist of weak segmentation labels produced by intensity thresholding of the raw SEM images and self labels produced by estimating orientation distribution of CNTs in these raw images. The proposed network extends a U-net-like encoder-decoder architecture with a novel two-component loss function. The first component is dice loss computed between the predicted segmentation maps and the weak segmentation labels. The second component is mean squared error (MSE) loss measuring the difference between the orientation histogram of the predicted segmentation map and the original raw image. Weighted sum of these two loss functions is used to train the proposed CNTSegNet network. The dice loss forces the network to perform background-foreground segmentation using local intensity features. The MSE loss guides the network with global orientation features and leads to refined segmentation results. The proposed system needs only a few-shot dataset for training. Thanks to it’s self-supervised nature, it can easily be adapted to new datasets. 
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