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Ecometric analyses use the relationships between functional traits and the environment at the community level to quantitatively estimate past climatic and environmental variables at fossil sites. Hypsodonty (tooth crown height) in North American rodent and lagomorph (Glires) communities is correlated with mean annual temperature and annual precipitation. Here, we examine the community hypsodonty of African Glires to test if this relationship translates to a continent with more extreme climates and to quantify paleoprecipitation at important fossil sites. Categorical hypsodonty values were gathered from the literature and museum collections for 94 modern African taxa (88%). We used maximum likelihood to model the ecometric relationship between hypsodonty and annual precipitation. We then produced trait-based estimates of paleoprecipitation for 26 well sampled fossil localities from eastern Africa over the last 5.7 Ma. We confirmed other regional studies by identifying increasing aridity and decreasing annual precipitation (824 mm to 480 mm) in the Late Miocene of Kenya. From the Ethiopian Shungura Formation, we estimated temporal fluctuations in precipitation that correspond with the presence or absence of paleolakes and rivers. Small mammal community hypsodonty illustrates that east African communities have converged towards mesodont means and high standard deviations in response to climate change. 

Species distribution models (SDMs), which relate recorded observations (presences) and absences or background points to environmental characteristics, are powerful tools used to generate hypotheses about the biogeography, ecology, and conservation of species. Although many researchers have examined the effects of presence and background point distributions on model outputs, they have not systematically evaluated the effects of various methods of background point sampling on the performance of a single model algorithm across many species. Therefore, a consensus on the preferred methods of background point sampling is lacking. Here, we conducted presence-background SDMs for 20 vertebrate species in North America under a variety of background point conditions, varying the number of background points used, the size of the buffer used to constrain the background points around the occurrences, and the percentage of background points sampled within the buffer (“spatial weighting”). We evaluated the accuracy and transferability of the models using Boyce index, overlap with expert-generated range maps, and area overpredicted and underpredicted by the SDM (and AUC for comparability with other studies). SDM performance is highly dependent on the species modelled but is affected by the number and spread of background points. Models with little spatial weighting had high accuracy (overlap values), but extreme extrapolation errors and overprediction. In contrast, SDMs with high transferability (high Boyce index values and low overprediction) had moderate-to-high spatial weighting. These results emphasize the importance of both background points and evaluation metric selection in SDMs. For other, more successful metrics, using many background points with spatial weighting may be preferred for models with large extents. These results can assist researchers in selecting the background point parameters most relevant for their research question, allowing them to fine-tune their hypotheses on the distribution of species through space and time. 

Environmental disturbances may prevent ecosystems from consistently performing their critical ecological functions. Two important properties of ecosystems are their resistance and stability, which respectively reflect their capacities to withstand and recover from disturbance events (e.g. droughts, wildfires, pests, etc). Theory suggests that resistant and stable ecosystems possess opposing characteristics, but this has seldom been established across diverse ecosystem attributes or broad spatial scales. Here, we compare the resistance and stability of >1000 protected area ecosystems in Africa to disturbance-induced losses in primary productivity from 2000 to 2019. We quantitatively evaluated each ecosystem such that following disturbances, an ecosystem is more resistant if it experiences lower-magnitude losses in productivity, and more stable if it returns more rapidly to pre-disturbance productivity levels. To compare the characteristics of resistant versus stable ecosystems, we optimized random forest models that use ecosystem attributes (representing their climatic and environmental conditions, plant and faunal biodiversity, and exposure to human impacts) to predict their resistance and, separately, stability values. We visualized each attribute’s relationship with resistance and stability after accounting for all other attributes in the model framework. Ecosystems that are more resistant to disturbances are less stable, and vice versa. The ecosystem attributes with the most predictive power in our models all exhibit contrasting relationships with resistance versus stability. Notably, highly resistant ecosystems are generally more arid and exhibit high habitat heterogeneity and mammalian biodiversity, while highly stable ecosystems are the opposite. We discuss the underlying mechanisms through which these attributes engender resistance or, conversely, stability. Our findings suggest that resistance and stability are fundamentally opposing phenomena. A balance between the two must be struck if ecosystems are to maintain their identity, structure, and function in the face of environmental change.

 

Plants will experience considerable changes in climate within their geographic ranges over the next several decades. They may respond by exhibiting niche flexibility and adapting to changing climates. Alternatively, plant taxa may exhibit climate fidelity, shifting their geographic distributions to track their preferred climates. Here, we examine the responses of plant taxa to changing climates over the past 18,000 y to evaluate the extent to which the 16 dominant plant taxa of North America have exhibited climate fidelity. We find that 75% of plant taxa consistently exhibit climate fidelity over the past 18,000 y, even during the times of most extreme climate change. Of the four taxa that do not consistently exhibit climate fidelity, three—elm ( Ulmus ), beech ( Fagus ), and ash ( Fraxinus )—experience a long-term shift in their realized climatic niche between the early Holocene and present day. Plant taxa that migrate longer distances better maintain consistent climatic niches across transition periods during times of the most extreme climate change. Today, plant communities with the highest climate fidelity are found in regions with high topographic and microclimate heterogeneity that are expected to exhibit high climate resilience, allowing plants to shift distributions locally and adjust to some amount of climate change. However, once the climate change buffering of the region is exceeded, these plant communities will need to track climates across broader landscapes but be challenged to do so because of the low habitat connectivity of the regions. 

Mammalian megafauna have been critical to the functioning of Earth’s biosphere for millions of years. However, since the Plio-Pleistocene, their biodiversity has declined concurrently with dramatic environmental change and hominin evolution. While these biodiversity declines are well-documented, their implications for the ecological function of megafaunal communities remain uncertain. Here, we adapt ecometric methods to evaluate whether the functional link between communities of herbivorous, eastern African megafauna and their environments (i.e., functional trait-environment relationships) was disrupted as biodiversity losses occurred over the past 7.4 Ma. Herbivore taxonomic and functional diversity began to decline during the Pliocene as open grassland habitats emerged, persisted, and expanded. In the mid-Pleistocene, grassland expansion intensified, and climates became more variable and arid. It was then that phylogenetic diversity declined, and the trait-environment relationships of herbivore communities shifted significantly. Our results divulge the varying implications of different losses in megafaunal biodiversity. Only the losses that occurred since the mid-Pleistocene were coincident with a disturbance to community ecological function. Prior diversity losses, conversely, occurred as the megafaunal species and trait pool narrowed towards those adapted to grassland environments.

 

We are in a modern biodiversity crisis that will restructure community compositions and ecological functions globally. Large mammals, important contributors to ecosystem function, have been affected directly by purposeful extermination and indirectly by climate and land-use changes, yet functional turnover is rarely assessed on a global scale using metrics based on functional traits. Using ecometrics, the study of functional trait distributions and functional turnover, we examine the relationship between vegetation cover and locomotor traits for artiodactyl and carnivoran communities. We show that the ability to detect a functional relationship is strengthened when locomotor traits of both primary consumers (artiodactyls, n = 157 species) and secondary consumers (carnivorans, n = 138 species) are combined into one trophically integrated ecometric model. Overall, locomotor traits of 81% of communities accurately estimate vegetation cover, establishing the advantage of trophically integrated ecometric models over single-group models (58 to 65% correct). We develop an innovative approach within the ecometrics framework, using ecometric anomalies to evaluate mismatches in model estimates and observed values and provide more nuance for understanding relationships between functional traits and vegetation cover. We apply our integrated model to five paleontological sites to illustrate mismatches in the past and today and to demonstrate the utility of the model for paleovegetation interpretations. Observed changes in community traits and their associated vegetations across space and over time demonstrate the strong, rapid effect of environmental filtering on community traits. Ultimately, our trophically integrated ecometric model captures the cascading interactions between taxa, traits, and changing environments. 

Ecosystem function relies in part on aligned relationships between functional traits of animals and the environments in which they live. Studies of trait-environment relationships have largely focused on communities of native species, but domestic and non-native species also play a role in the functioning of modern ecosystems. We use ecometrics, or study of functional trait-environment relationships, to evaluate the impact of domestic and non-native species on community-level trait composition and its relationship with precipitation by comparing four community compositions: modern native, modern native plus domestic, modern native plus non-native, and late Pleistocene (0.126–0.0117 Ma). We integrate large and small herbivorous mammals into a single ecometric model of hypsodonty (i.e., tooth crown height) and annual precipitation (n=8439, r=-0.7, R2=0.4, p<0.001). We hypothesize: 1) ecometric models of modern native communities will differ from those for late Pleistocene communities, 2) inclusion of domestic species will align ecometric relationships with those from the late Pleistocene, 3) inclusion of non-native species will maintain ecometric relationships of modern native communities. We found modern communities of native species have lower hypsodonty values and higher precipitation estimates than late Pleistocene communities. Domestic species shift modern communities toward higher hypsodonty values and lower precipitation estimates like those in the late Pleistocene. Today’s domestics are mostly high-crowned grazing species representative of the fauna lost prior to the Holocene. Non-native species do not shift modern native trait composition or the associated precipitation estimates, illustrating the success of non-native species due to trait alignment with their new environments. Thus, conservation and restoration efforts should consider trait composition of whole communities because it provides unique information to measures of taxonomic composition.