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Onishi, Masayuki (Ed.)Although synaptic evolution has been extensively studied, how axons first arose remains unexplored. Because evolution often occurs by coopting existing features, we review the evolutionary histories, biophysics, and cell biology of cytokinesis, cell crawling, and ciliogenesis to explore the origin of axons. Although we found that cilia and axons are outwardly similar, and growth cones strongly resemble the leading edge of crawling cells, the biophysical processes and the critical proteins that drive each seem weakly linked to axons as a structure. In contrast, the traction force machinery that pulls daughter cells apart during cytokinesis and the cytoskeletal organization of cytokinetic bridges appear to have a one-to-one correspondence to neuronal growth cones and axons. Based on these observations, we propose the hypothesis that axons evolved due to mutations that partially activated cytokinesis in an interphase cell. To rigorously test this hypothesis, we suggest conducting systematic phylogenetic analysis of the genes essential for each process, paired with molecular genetic studies in which critical genes are systematically disrupted. Doing so will provide a framework for understanding the relationship between diverse cellular processes, the early evolution of neurons, and insights that could potentially assist in treating cancer and promoting neuronal regeneration.more » « less
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While the structural organization and molecular biology of neurons are well characterized, the physical process of axonal elongation remains elusive. The classic view posited elongation occurs through the deposition of cytoskeletal elements in the growth cone at the tip of a stationary array of microtubules. Yet, recent studies reveal axonal microtubules and docked organelles flow forward in bulk in the elongating axons ofAplysia, chick sensory, rat hippocampal, andDrosophilaneurons. Noting that the morphology, molecular components, and subcellular flow patterns of growth cones strongly resemble the leading edge of migrating cells and the polar regions of dividing cells, our working hypothesis is that axonal elongation utilizes the same physical mechanisms that drive cell crawling and cell division. As a test of that hypothesis, here we take experimental data sets of sub-cellular flow patterns in cells undergoing cytokinesis, mesenchymal migration, amoeboid migration, neuronal migration, and axonal elongation. We then apply active fluid theory to develop a biophysical model that describes the different sub-cellular flow profiles across these forms of motility and how this generates cell motility under low Reynolds numbers. The modeling suggests that mechanisms for generating motion are shared across these processes, and differences arise through modifications of sub-cellular adhesion patterns and the profiles of internal force generation. Collectively, this work suggests that ameboid and mesenchymal cell crawling may have arisen from processes that first developed to support cell division, that growth cone motility and cell crawling are closely related, and that neuronal migration and axonal elongation are fundamentally similar, differing primarily in the motion and strength of adhesion under the cell body.more » « less
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The global instability index (GII) is a computationally inexpensive bond valence-based metric originally designed to evaluate the total bond strain in a crystal. Recently, the GII has gained popularity as a feature of data-driven models in materials research. Although prior studies have proven that GII is an effective predictor of structural distortions and decomposition energy when applied to small datasets, the wider use of GII as a global indicator of structural stability has yet to be evaluated. To that end, we compute GII for thousands of compounds in inorganic structure databases and partition compounds by chemical interactions underlying their stability to understand the GII values and their variations. Our results show that the GII captures relative chemical trends, such as electronegativity, even beyond the intended domain of strongly ionic compounds. However, we also find that GII magnitudes vary significantly with factors such as chemistry (cation–anion identities and bond character), geometry (connectivity), data source, and model bias, making GII suitable for comparisons within controlled datasets but unsuitable as an absolute, universal metric for structural feasibility.more » « less
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The quality of electron beams produced from plasma-based accelerators, i.e., normalized brightness and energy spread, has made transformative progress in the past several decades in both simulation and experiment. Recently, full-scale particle-in-cell (PIC) simulations have shown that electron beams with unprecedented brightness (1020–1021 A=m2=rad2) and 0.1–1 MeVenergy spread can be produced through controlled injection in a slowly expanding bubble that arises when a particle beam or laser pulse propagates in density gradient, or when a particle beam self-focuses in uniform plasma or has a superluminal flying focus. However, in previous simulations of work on self-injection triggered by an evolving laser driver in a uniform plasma, the resulting beams did not exhibit comparable brightnesses and energy spreads. Here, we demonstrate through the use of large-scale high-fidelity PIC simulations that a slowly expanding bubble driven by a laser pulse in a uniform plasma can indeed produce self-injected electron beams with similar brightness and energy spreads as for an evolving bubble driven by an electron beam driver. We consider laser spot sizes roughly equal to the matched spot sizes in a uniform plasma and find that the evolution of the bubble occurs naturally through the evolution of the laser. The effects of the electron beam quality on the choice of physical as well as numerical parameters, e.g., grid sizes and field solvers used in the PIC simulations are presented. It is found that this original and simplest injection scheme can produce electron beams with beam quality exceeding that of the more recent concepts.more » « less
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Abstract Laser wakefield accelerators (LWFAs) have electric fields that are orders of magnitude larger than those of conventional accelerators, promising an attractive, small-scale alternative for next-generation light sources and lepton colliders. The maximum energy gain in a single-stage LWFA is limited by dephasing, which occurs when the trapped particles outrun the accelerating phase of the wakefield. Here, we demonstrate that a single space–time structured laser pulse can be used for ionization injection and electron acceleration over many dephasing lengths in the bubble regime. Simulations of a dephasingless laser wakefield accelerator driven by a 6.2-J laser pulse show 25 pC of injected charge accelerated over 20 dephasing lengths (1.3 cm) to a maximum energy of 2.1 GeV. The space–time structured laser pulse features an ultrashort, programmable-trajectory focus. Accelerating the focus, reducing the focused spot-size variation, and mitigating unwanted self-focusing stabilize the electron acceleration, which improves beam quality and leads to projected energy gains of 125 GeV in a single, sub-meter stage driven by a 500-J pulse.more » « less
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Bremsstrahlung x rays generated in laser-solid interactions can be used as light sources for high-energy-density science. We present electron and x-ray spectra from multidimensional kinetic simulations with varying laser pulse intensity and duration at fixed energy of 200J. A phenomenological model for the transition from superponderomotive to ponderomotive temperatures is described, yielding a temperature scaling that depends on pulse duration and density scale length. The shortest pulses create low-divergence electron beams before self-generated magnetic fields evolve, yielding 1–5−MeV forward-going x rays containing ∼0.5% of the laser energy.more » « less
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In a laser wakefield accelerator (LWFA), an intense laser pulse excites a plasma wave that traps and accelerates electrons to relativistic energies. When the pulse overlaps the accelerated electrons, it can enhance the energy gain through direct laser acceleration (DLA) by resonantly driving the betatron oscillations of the electrons in the plasma wave. The traditional particle-in-cell (PIC) algorithm, although often the tool of choice to study DLA, contains inherent errors due to numerical dispersion and the time staggering of the electric and magnetic fields. Furthermore, conventional PIC implementations cannot reliably disentangle the fields of the plasma wave and laser pulse, which obscures interpretation of the dominant acceleration mechanism. Here, a customized field solver that reduces errors from both numerical dispersion and time staggering is used in conjunction with a field decomposition into azimuthal modes to perform PIC simulations of DLA in an LWFA. Comparisons with traditional PIC methods, model equations, and experimental data show improved accuracy with the customized solver and convergence with an order-of-magnitude fewer cells. The azimuthal-mode decomposition reveals that the most energetic electrons receive comparable energy from DLA and LWFA.more » « less
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Abstract The longitudinal coherence of X-ray free-electron lasers (XFELs) in the self-amplified spontaneous emission regime could be substantially improved if the high brightness electron beam could be pre-bunched on the radiated wavelength-scale. Here, we show that it is indeed possible to realize such current modulated electron beam at angstrom scale by exciting a nonlinear wake across a periodically modulated plasma-density downramp/plasma cathode. The density modulation turns on and off the injection of electrons in the wake while downramp provides a unique longitudinal mapping between the electrons’ initial injection positions and their final trapped positions inside the wake. The combined use of a downramp and periodic modulation of micrometers is shown to be able to produces a train of high peak current (17 kA) electron bunches with a modulation wavelength of 10’s of angstroms - orders of magnitude shorter than the plasma density modulation. The peak brightness of the nano-bunched beam can be O (10 21 A/m 2 /rad 2 ) orders of magnitude higher than current XFEL beams. Such prebunched, high brightness electron beams hold the promise for compact and lower cost XEFLs that can produce nanometer radiation with hundreds of GW power in a 10 s of centimeter long undulator.more » « less
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We are developing an X-ray source for radiography of high-energy density (HED) experiments by passing a picosecond, relativistic laser beam through an underdense plasma to generate a relativistic beam of electrons. These electrons, in turn, generate bright, (1010 photon/keV/sr), high energy (10 keV - 1 MeV) X-rays. Over the years, this X-ray platform has been demonstrated on the Titan, Omega EP, and NIF-ARC lasers. This paper gives the present state of the field and argues that the platform has reached a level of maturity where the X-rays produced using this novel platform have the potential to find radiographic applications in a broad range of fields. Index Terms—X-ray, High Energy Density Science (HEDS), Self-Modulated Plasma Instability, NIF, OMEGA, Backlightermore » « less
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