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  1. Abstract

    Marine protected areas (MPAs) globally serve conservation and fisheries management goals, generating positive effects in some marine ecosystems. Surf zones and sandy beaches, critical ecotones bridging land and sea, play a pivotal role in the life cycles of numerous fish species and serve as prime areas for subsistence and recreational fishing. Despite their significance, these areas remain understudied when evaluating the effects of MPAs. We compared surf zone fish assemblages inside and outside MPAs across 3 bioregions in California (USA). Using seines and baited remote underwater videos (BRUVs), we found differences in surf zone fish inside and outside MPAs in one region. Inside south region MPAs, we observed higher abundance (Tukey's honest significant difference [HSD] = 0.83,p = 0.0001) and richness (HSD = 0.22,p = 0.0001) in BRUVs and greater biomass (HSD = 0.32,p = 0.0002) in seine surveys compared with reference sites. Selected live‐bearing, fished taxa were positively affected by MPAs. Elasmobranchs displayed greater abundance in BRUV surveys and higher biomass in seine surveys inside south region MPAs (HSD = 0.35,p = 0.0003 and HSD = 0.23,p = 0.008, respectively). Although we observed no overall MPA signal for Embiotocidae, abundances of juvenile and large adult barred surfperch (Amphistichus argenteus), the most abundant fished species, were higher inside MPAs (K–S testD = 0.19,p < 0.0001). Influence of habitat characteristics on MPA performance indicated surf zone width was positively associated with fish abundance and biomass but negatively associated with richness. The south region had the largest positive effect size on all MPA performance metrics. Our findings underscored the variability in species richness and composition across regions and survey methods that significantly affected differences observed inside and outside MPAs. A comprehensive assessment of MPA performance should consider specific taxa, their distribution, and the effects of habitat factors and geography.

     
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    Free, publicly-accessible full text available May 21, 2025
  2. T cells are a primary component of the vertebrate adaptive immune system. There are three mammalian T cell lineages based on their T cell receptors (TCR). The αβ T cells and γδ T cells are ancient and found broadly in vertebrates. The more recently discovered γμ T cells are uniquely mammalian and only found in marsupials and monotremes. In this study, we compare the TCRμ locus (TRM) across the genomes of two marsupials, the grey short-tailed opossum and Tasmanian devil, and one monotreme, the platypus. These analyses revealed lineage specific duplications, common to all non-eutherian mammals described. There is conserved synteny in the TRM loci of both marsupials but not in the monotreme. Our results are consistent with an ancestral cluster organization which was present in the last common mammalian ancestor which underwent lineage specific duplications and divergence among the non-eutherian mammals. 
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  3. Alluvial fans are found across a range of climates and are built from a combination of fluvial and debris flow processes. Correct identification of process is critical to reconstructing the climate and water histories of alluvial fans on Earth and Mars. Theory and data from subaerial Earth fans are often used to estimate paleoflow discharges and sediment fluxes for martian fans; however, most terrestrial work has been conducted on fans that are in hot, dry climates with runoff sourced from rainfall. This differs from the prevailing interpretation that martian fans were sourced from snowmelt under warming periglacial conditions. To characterize processes and rates of periglacial fan formation, we conducted a field-based study of the Black Mountain alluvial fan in the Aklavik Range, Canada. We observed active fluvial bedload transport as well as several small debris flows that had initiated from ice-filled gullies. Following a runoff event of ∼0.005 mm/hr to ∼0.2 mm/hr across the fan, we estimated sediment fluxes of ∼0.04 m3/hr. Under bankfull conditions, we estimated runoff rates between ∼0.01 mm/hr to ∼14 mm/hr and corresponding sediment fluxes of ∼0.3 m3/hr to ∼550 m3/hr. This suggests that moderate flow events, well below the maximum runoff production rates suggested for Mars, are capable of entraining and transporting appreciable amounts of sediment by fluvial processes. However, sedimentological and geomorphological observations suggest that ∼67% of the fan was deposited fluvially; the remainder was deposited by mass flows. Our results emphasize the need to take care in interpreting martian sedimentary processes and climate from fan surface morphology alone. 
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  4. The concerted interplay between reactive nuclear and electronic motions in molecules actuates chemistry. Here, we demonstrate that out-of-plane torsional deformation and vibrational excitation of stretching motions in the electronic ground state modulate the charge-density distribution in a donor-bridge-acceptor molecule in solution. The vibrationally-induced change, visualised by transient absorption spectroscopy with a mid-infrared pump and a visible probe, is mechanistically resolved by ab initio molecular dynamics simulations. Mapping the potential energy landscape attributes the observed charge-coupled coherent nuclear motions to the population of the initial segment of a double-bond isomerization channel, also seen in biological molecules. Our results illustrate the pivotal role of pre-twisted molecular geometries in enhancing the transfer of vibrational energy to specific molecular modes, prior to thermal redistribution. This motivates the search for synthetic strategies towards achieving potentially new infrared-mediated chemistry. 
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  5. Noble element time projection chambers are a leading technology for rare event detection in physics, such as for dark matter and neutrinoless double beta decay searches. Time projection chambers typically assign event position in the drift direction using the relative timing of prompt scintillation and delayed charge collection signals, allowing for reconstruction of an absolute position in the drift direction. In this paper, alternate methods for assigning event drift distance via quantification of electron diffusion in a pure high pressure xenon gas time projection chamber are explored. Data from the NEXT-White detector demonstrate the ability to achieve good position assignment accuracy for both high- and low-energy events. Using point-like energy deposits from$$^{83\textrm{m}}$$83mKr calibration electron captures ($$E\sim 45$$E45 keV), the position of origin of low-energy events is determined to 2 cm precision with bias$$< 1~$$<1mm. A convolutional neural network approach is then used to quantify diffusion for longer tracks ($$E\ge ~1.5$$E1.5 MeV), from radiogenic electrons, yielding a precision of 3 cm on the event barycenter. The precision achieved with these methods indicates the feasibility energy calibrations of better than 1% FWHM at Q$$_{\beta \beta }$$ββin pure xenon, as well as the potential for event fiducialization in large future detectors using an alternate method that does not rely on primary scintillation.

     
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    Free, publicly-accessible full text available May 1, 2025
  6. Abstract

    Ultrafast electron diffraction and time-resolved serial crystallography are the basis of the ongoing revolution in capturing at the atomic level of detail the structural dynamics of molecules. However, most experiments capture only the probability density of the nuclear wavepackets to determine the time-dependent molecular structures, while the full quantum state has not been accessed. Here, we introduce a framework for the preparation and ultrafast coherent diffraction from rotational wave packets of molecules, and we establish a new variant of quantum state tomography for ultrafast electron diffraction to characterize the molecular quantum states. The ability to reconstruct the density matrix, which encodes the amplitude and phase of the wavepacket, for molecules of arbitrary degrees of freedom, will enable the reconstruction of a quantum molecular movie from experimental x-ray or electron diffraction data.

     
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