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This work presents a morpho-hydrodynamic model and a numerical approximation designed for the fast and accurate simulation of sediment movement associated with extreme events, such as tsunamis. The model integrates the well-established hydrostatic shallow-water equations with a transport equation for the moving bathymetry that relies on a bedload transport function. Subsequently, this model is discretized using the path-conservative finite volume framework to yield a numerical scheme that is not only fast but also second-order accurate and well-balanced for the lake-at-rest solution. The numerical discretization separates the hydrodynamic and morphodynamic components of the model but leverages the eigenstructure information to evolve the morphologic part in an upwind fashion, preventing spurious oscillations. The study includes various numerical experiments, incorporating comparisons with laboratory experimental data and field surveys. 

The analysis of the gender dynamics in scientific research and respective outputs is crucial for ensuring that science policy is inclusive and equitable. Similar to other research outputs such as publications and patents, open source software (OSS) projects are also developed by contributors from universities, government research institutions, and nonprofits, in addition to businesses. Despite its reach and continued rapid growth, reliable and comprehensive survey data on OSS does not exist, limiting insights into contributions by gender and policy- makers’ ability to assess trends in gender representation. Like in scientific research, the inclusion of diverse perspectives in software development enhances creativity and problem-solving. Using GitHub data, researchers have found positive correlations between gender diversity of an OSS development team and its productivity (Vasilescu et al., 2015; Ortu et al., 2017). Yet there is evidence of gender bias, with women facing higher standards to have their contributions accepted (Terrell et al., 2017; Imtiaz et al., 2019). This exploratory study aims to quantify gender differences in development and use (impact) of OSS using publicly available information collected from GitHub. We focus on software packages developed for programming language R, with the majority of contributors from academia. The paper asks (1) what are gender differences in the volume of contributions? (2) has gender representation shifted over time? (3) is there a correlation between the gender of contributors and the impact of a package? 

It is usually assumed that interaction potentials, in general, and atom-surface potential, in particular, can be expressed in terms of an expansion involving integer powers of the distance between the two interacting objects. Here, we show that, in the short-range expansion of the interaction potential of a neutral atom and a dielectric surface, logarithms of the atom-wall distance appear. These logarithms are accompanied with logarithmic sums over virtual excitations of the atom interacting with the surface in analogy to Bethe logarithms in quantum electrodynamics. We verify the presence of the logarithmic terms in the short-range expansion using a model problem with realistic parameters. By contrast, in the long-range expansion of the atom-surface potential, no logarithmic terms appear, and the interaction potential can be described by an expansion in inverse integer powers of the atom-wall distance. Several subleading terms in the large-distance expansion are obtained as a byproduct of our investigations. Our findings explain why the use of simple interpolating rational functions for the description of the atom-wall interaction in the intermediate regions leads to significant deviations from exact formulas. 

PICO bubble chambers have exceptional sensitivity to inelastic dark matter-nucleus interactions due to a combination of their extended nuclear recoil energy detection window from a few keV to O(100 keV) or more and the use of iodine as a heavy target. Inelastic dark matter-nucleus scattering is interesting for studying the properties of dark matter, where many theoretical scenarios have been developed. This study reports the results of a search for dark matter inelastic scattering with the PICO-60 bubble chambers. The analysis reported here comprises physics runs from PICO-60 bubble chambers using CF3I and C3F8. The CF3I run consisted of 36.8 kg of CF3I reaching an exposure of 3415 kg-day operating at thermodynamic thresholds between 7 and 20 keV. The C3F8 runs consisted of 52 kg of C3F8 reaching exposures of 1404 kg-day and 1167 kg-day running at thermodynamic thresholds of 2.45 keV and 3.29 keV, respectively. The analysis disfavors various scenarios, in a wide region of parameter space, that provide a feasible explanation of the signal observed by DAMA, assuming an inelastic interaction, considering that the PICO CF3I bubble chamber used iodine as the target material. 

We present a deep learning-based method for estimating the neutrino energy of charged-current neutrino-argon interactions. We employ a recurrent neural network (RNN) architecture for neutrino energy estimation in the MicroBooNE experiment, utilizing liquid argon time projection chamber (LArTPC) detector technology. Traditional energy estimation approaches in LArTPCs, which largely rely on reconstructing and summing visible energies, often experience sizable biases and resolution smearing because of the complex nature of neutrino interactions and the detector response. The estimation of neutrino energy can be improved after considering the kinematics information of reconstructed final-state particles. Utilizing kinematic information of reconstructed particles, the deep learning-based approach shows improved resolution and reduced bias for the muon neutrino Monte Carlo simulation sample compared to the traditional approach. In order to address the common concern about the effectiveness of this method on experimental data, the RNN-based energy estimator is further examined and validated with dedicated data-simulation consistency tests using MicroBooNE data. We also assess its potential impact on a neutrino oscillation study after accounting for all statistical and systematic uncertainties and show that it enhances physics sensitivity. This method has good potential to improve the performance of other physics analyses. Published by the American Physical Society2024 

We present a measurement of neutral pion production in charged-current interactions using data recorded with the MicroBooNE detector exposed to Fermilab’s booster neutrino beam. The signal comprises one muon, one neutral pion, any number of nucleons, and no charged pions. Studying neutral pion production in the MicroBooNE detector provides an opportunity to better understand neutrino-argon interactions, and is crucial for future accelerator-based neutrino oscillation experiments. Using a dataset corresponding to $6.86\times {10}^{20}$protons on target, we present single-differential cross sections in muon and neutral pion momenta, scattering angles with respect to the beam for the outgoing muon and neutral pion, as well as the opening angle between the muon and neutral pion. Data extracted cross sections are compared to generator predictions. We report good agreement between the data and the models for scattering angles, except for an over-prediction by generators at muon forward angles. Similarly, the agreement between data and the models as a function of momentum is good, except for an underprediction by generators in the medium momentum ranges, 200–400 MeV for muons and 100–200 MeV for pions. Published by the American Physical Society2024 

One of the primary tasks in neuroimaging is to simplify spatiotemporal scans of the brain (i.e., fMRI scans) by partitioning the voxels into a set of functional brain regions. An emerging line of research utilizes multiple fMRI scans, from a group of subjects, to calculate a single group consensus functional partition. This consensus-based approach is promising as it allows the model to improve the signalto-noise ratio in the data. However, existing approaches are primarily non-parametric which poses problems when new samples are introduced. Furthermore, most existing approaches calculate a single partition for multiple subjects which fails to account for the functional and anatomical variability between different subjects. In this work, we study the problem of group-cohesive functional brain region discovery where the goal is to use information from a group of subjects to learn “group-cohesive” but individualized brain partitions for multiple fMRI scans. This problem is challenging since neuroimaging datasets are usually quite small and noisy. We introduce a novel deep parametric model based upon graph convolution, called the Brain Region Extraction Network (BREN). By treating the fMRI data as a graph, we are able to integrate information from neighboring voxels during brain region discovery which helps reduce noise for each subject. Our model is trained with a Siamese architecture to encourage partitions that are group-cohesive. Experiments on both synthetic and real-world data show the effectiveness of our proposed approach. 

Neuroimaging data typically undergoes several preprocessing steps before further analysis and mining can be done. Affine image registration is one of the important tasks during preprocessing. Recently, several image registration methods which are based on Convolutional Neural Networks have been proposed. However, due to the high computational and memory requirements of CNNs, these methods cannot be used in real-time for large neuroimaging data like fMRI. In this paper, we propose a Dual-Attention Recurrent Network (DRN) which uses a hard attention mechanism to allow the model to focus on small, but task-relevant, parts of the input image – thus reducing computational and memory costs. Furthermore, DRN naturally supports inhomogeneity between the raw input image (e.g., functional MRI) and the image we want to align it to (e.g., anatomical MRI) so it can be applied to harder registration tasks such as fMRI coregistration and normalization. Extensive experiments on two different datasets demonstrate that DRN significantly reduces the computational and memory costs compared with other neural network-based methods without sacrificing the quality of image registration