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Abstract The stone marten (Martes foina) is an important species for cytogenetic studies in the order Carnivora. ZooFISH probes created from its chromosomes provided a strong and clean signal in chromosome painting experiments and were valuable for studying the evolution of carnivoran genome architecture. The research revealed that the stone marten chromosome set is similar to the presumed ancestral karyotype of the Carnivora, which added an additional value for the species. Using linked-read and Hi-C sequencing, we generated a chromosome-length genome assembly of a male stone marten (Gansu province, China) from a primary cell line. The stone marten assembly had a length of 2.42 Gbp, scaffold N50 of 144 Mbp, and a 96.2% BUSCO completeness score. We identified 19 chromosomal scaffolds (2n = 38) and assigned them chromosome ids based on chromosome painting data. Annotation identified 20,087 protein-coding gene models, of which 18,283 were assigned common names. Comparison of the stone marten assembly with the cat, dog, and human genomes revealed several small syntenic blocks absent on the published painting maps. Finally, we assessed the heterozygosity and its distribution over the chromosomes. The detected low heterozygosity level (0.4 hetSNPs/kbp) and the presence of long runs of homozygosity require further research and a new evaluation of the conservation status of the stone marten in China. Combined with available carnivoran genomes in large-scale synteny analysis, the stone marten genome will highlight new features and events in carnivoran evolution, hidden from cytogenetic approaches. 

Abstract We describe a new species of Crocidura (Soricidae) from Sulawesi Island, Indonesia, documenting its novelty with both genetic and morphological characters. The new species is widespread on the island, with vouchered records from nine general localities distributed among five of the island’s areas of endemism. Morphologically, the new species is readily distinguished from all other described Sulawesi Crocidura by its intermediate body size, gray pelage, and long, hairy tail. The new species was mainly captured in pitfalls placed in the ground, but we also obtained evidence that it readily climbs trees and may be scansorial in its locomotor habits. Populations of the new species sampled from across the island are closely related, separated by < 0.02 uncorrected mitochondrial p-distances. The new species is one member of an endemic radiation of shrews on Sulawesi now known to contain six valid species and several undescribed species, all within the genus Crocidura. Resolution of species limits and phylogenetic relationships in this radiation is hindered by habitat loss at type localities, historical designation of new species using very small sample sizes, and a lack of genetic data from type specimens. Kami mendeskripsikan spesies baru Crocidura (Soricidae) dari Pulau Sulawesi, Indonesia, sekaligus mendokumentasikan keunikan karakter secara genetik maupun morfologi dari spesies tersebut. Spesies baru ini tersebar luas di Pulau Sulawesi, diketahui berdasarkan spesimen yang berasal dari sembilan lokasi umum yang tersebar di lima kawasan endemik di pulau tersebut. Secara morfologi, spesies baru ini dapat dibedakan dari spesies Crocidura lainnya dari Sulawesi berdasarkan ukuran tubuh yang sedang, rambut tubuh berwarna abu-abu, dan ekor yang panjang dan berambut. Spesies baru ini sebagian besar diperoleh dari perangkap sumuran yang ditanam didalam tanah, selain itu kami juga mendapatkan bukti bahwa spesies ini mampu memanjat pohon dan kemungkinan memiliki perilaku sebagai pemanjat. Beberapa populasi spesies yang dikoleksi dari Sulawesi ini mempunyai kekerabatan yang dekat, hanya dipisahkan oleh jarak proporsi DNA mitokondria (tidak terkoreksi) sebesar < 0.02. Spesies baru ini merupakan salah satu anggota dari suatu kelompok radiasi endemik cecurut di Sulawesi yang sampai saat ini diketahui terdiri atas enam spesies yang valid, dan beberapa spesies yang belum dideskripsikan, semuanya termasuk didalam genus Crocidura. Kepastian dalam menetapkan batasan jarak antar spesies dan hubungan kekerabatan genetik dari radiasi kelompok cecurut di Sulawesi terkendala oleh kerusakan habitat pada lokasi spesimen tipe, sejarah penamaan spesies yang hanya berdasarkan sampel yang sedikit, dan keterbatasan data molekuler dari spesimen tipe.