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This work develops analysis and algorithms for solving a class of bilevel optimization problems where the lower-level (LL) problems have linear constraints. Most of the existing approaches for constrained bilevel problems rely on value function-based approximate reformulations, which suffer from issues such as non-convex and non-differentiable constraints. In contrast, in this work, we develop an implicit gradient-based approach, which is easy to implement, and is suitable for machine learning applications. We first provide an in-depth understanding of the problem, by showing that the implicit objective for such problems is in general non-differentiable. However, if we add some small (linear) perturbation to the LL objective, the resulting implicit objective becomes differentiable almost surely. This key observation opens the door for developing (deterministic and stochastic) gradient-based algorithms similar to the state-of-the-art ones for unconstrained bi-level problems. We show that when the implicit function is assumed to be stronglyconvex, convex, and weakly-convex, the resulting algorithms converge with guaranteed rate. Finally, we experimentally corroborate the theoretical findings and evaluate the performance of the proposed framework on numerical and adversarial learning problems.