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Creators/Authors contains: "Quinlan, J."

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  1. Interactions between an evolving solid and inviscid flow can result in substantial computational complexity, particularly in circumstances involving varied boundary conditions between the solid and fluid phases. Examples of such interactions include melting, sublimation, and deflagration, all of which exhibit bidirectional coupling, mass/heat transfer, and topological change of the solid–fluid interface. The diffuse interface method is a powerful technique that has been used to describe a wide range of solid-phase interface-driven phenomena. The implicit treatment of the interface eliminates the need for cumbersome interface tracking, and advances in adaptive mesh refinement have provided a way to sufficiently resolve diffuse interfaces without excessive computational cost. However, the general scale-invariant coupling of these techniques to flow solvers has been relatively unexplored. In this work, a robust method is presented for treating diffuse solid–fluid interfaces with arbitrary boundary conditions. Source terms defined over the diffuse region mimic boundary conditions at the solid–fluid interface, and it is demonstrated that the diffuse length scale has no adverse effects. To show the efficacy of the method, a one-dimensional implementation is introduced and tested for three types of boundaries: mass flux through the boundary, a moving boundary, and passive interaction of the boundary with an incident acoustic wave. Two-dimensional results are presented as well these demonstrate expected behavior in all cases. Convergence analysis is also performed and compared against the sharp-interface solution, and linear convergence is observed. This method lays the groundwork for the extension to viscous flow and the solution of problems involving time-varying mass-flux boundaries. 
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  2. Maternal stress has been linked to low birth weight in newborns. One potential pathway involves epigenetic changes at candidate genes that may mediate the effects of prenatal maternal stress on birth weight. This relationship has been documented in stress-related genes, such as NR3C1 . There is less literature exploring the effect of stress on growth-related genes. IGF1 and IGF2 have been implicated in fetal growth and development, though via different mechanisms as IGF2 is under imprinting control. In this study, we tested for associations between prenatal stress, methylation of IGF1 and IGF2 , and birth weight. A total of 24 mother–newborn dyads in the Democratic Republic of Congo were enrolled. Ethnographic interviews were conducted with mothers at delivery to gather culturally relevant war-related and chronic stressors. DNA methylation data were generated from maternal venous, cord blood and placental tissue samples. Multivariate regressions were used to test for associations between stress measures, DNA methylation and birth weight in each of the three tissue types. We found an association between IGF2 methylation in maternal blood and birth weight. Previous literature on the relationship between IGF2 methylation and birth weight has focused on methylation at known differentially methylated regions in cord blood or placental samples. Our findings indicate there may be links between the maternal epigenome and low birth weight that rely on mechanisms outside known imprinting pathways. It thus may be important to consider the effect of maternal exposures and epigenetic profiles on birth weight even in the setting of maternally imprinted genes such as IGF2 . 
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