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GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

https://doi.org/10.1038/s41467-020-14998-3

Ranallo-Benavidez, T. Rhyker ; Jaron, Kamil S. ; Schatz, Michael C. ( December 2020 , Nature Communications)

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Optimized sample selection for cost-efficient long-read population sequencing

https://doi.org/10.1101/gr.264879.120

Ranallo-Benavidez, T. Rhyker ; Lemmon, Zachary ; Soyk, Sebastian ; Aganezov, Sergey ; Salerno, William J. ; McCoy, Rajiv C. ; Lippman, Zachary B. ; Schatz, Michael C. ; Sedlazeck, Fritz J. ( May 2021 , Genome Research)
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Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato

https://doi.org/10.1016/j.cell.2020.05.021

Alonge, Michael ; Wang, Xingang ; Benoit, Matthias ; Soyk, Sebastian ; Pereira, Lara ; Zhang, Lei ; Suresh, Hamsini ; Ramakrishnan, Srividya ; Maumus, Florian ; Ciren, Danielle ; et al ( June 2020 , Cell)

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