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ABSTRACT Plants exhibit extensive environment-dependent intraspecific metabolic variation, which likely plays a role in determining variation in whole plant phenotypes. However, much of the work seeking to use natural variation to link genes and transcript’s impacts on plant metabolism has employed data from controlled environments. Here we generate and employ data on variation in the abundance of twenty-six metabolites across 660 maize inbred lines under field conditions. We employ these data and previously published transcript and whole plant phenotype data reported for the same field experiment to identify both genomic intervals (through genome-wide association studies) and transcripts (through both transcriptome-wide association studies and an explainable AI approach based on the random forest) associated with variation in metabolite abundance. Both genome-wide association and random forest-based methods identified substantial numbers of significant associations including genes with plausible links to the metabolites they are associated with. In contrast, the transcriptome-wide association identified only six significant associations. In three cases, genetic markers associated with metabolic variation in our study colocalized with markers linked to variation in non-metabolic traits scored in the same experiment. We speculate that the poor performance of transcriptome-wide association studies in identifying transcript-metabolite associations may reflect a high prevalence of non-linear interactions between transcripts and metabolites and/or a bias towards rare transcripts playing a large role in determining intraspecific metabolic variation. 

Abstract Haystack and Owens Valley Radio Observatory observations recently revealed strong, intermittent, sinusoidal total flux-density variations that maintained their coherence between 1975 and 2021 in the blazar PKS 2131−021 (z= 1.283). This was interpreted as possible evidence of a supermassive black hole binary (SMBHB). Extended observations through 2023 show a coherence over 47.9 yr, with an observed periodP_{15 GHz}= (1739.8 ± 17.4) days. We reject, withp-value = 2.09 × 10⁻⁷, the hypothesis that the variations are due to random fluctuations in the red noise tail of the power spectral density. There is clearly a physical phenomenon in PKS 2131−021 producing coherent sinusoidal flux-density variations. We find the coherent sinusoidal intensity variations extend from below 2.7 GHz to optical frequencies, from which we derive an observed periodP_optical= (1764 ± 36) days. Across this broad frequency range, there is a smoothly varying monotonic phase shift in the sinusoidal variations with frequency. Hints of periodic variations are also observed atγ-ray energies. The importance of well-vetted SMBHB candidates to searches for gravitational waves is pointed out. We estimate the fraction of blazars that are SMBHB candidates to be >1 in 100. Thus, monitoring programs covering tens of thousands of blazars could discover hundreds of SMBHB candidates. 

Abstract Long-period radio transients are an emerging class of extreme astrophysical events of which only three are known. These objects emit highly polarized, coherent pulses of typically a few tens of seconds duration, and minutes to approximately hour-long periods. Although magnetic white dwarfs and magnetars, either isolated or in binary systems, have been invoked to explain these objects, a consensus has not emerged. Here we report on the discovery of ASKAP J193505.1+214841.0 (henceforth ASKAP J1935+2148) with a period of 53.8 minutes showing 3 distinct emission states—a bright pulse state with highly linearly polarized pulses with widths of 10–50 seconds; a weak pulse state that is about 26 times fainter than the bright state with highly circularly polarized pulses of widths of approximately 370 milliseconds; and a quiescent or quenched state with no pulses. The first two states have been observed to progressively evolve over the course of 8 months with the quenched state interspersed between them suggesting physical changes in the region producing the emission. A constraint on the radius of the source for the observed period rules out an isolated magnetic white-dwarf origin. Unlike other long-period sources, ASKAP 1935+2148 shows marked variations in emission modes reminiscent of neutron stars. However, its radio properties challenge our current understanding of neutron-star emission and evolution. 

SUMMARY Maize (Zea maysssp.mays) populations exhibit vast ranges of genetic and phenotypic diversity. As sequencing costs have declined, an increasing number of projects have sought to measure genetic differences between and within maize populations using whole‐genome resequencing strategies, identifying millions of segregating single‐nucleotide polymorphisms (SNPs) and insertions/deletions (InDels). Unlike older genotyping strategies like microarrays and genotyping by sequencing, resequencing should, in principle, frequently identify and score common genetic variants. However, in practice, different projects frequently employ different analytical pipelines, often employ different reference genome assemblies and consistently filter for minor allele frequency within the study population. This constrains the potential to reuse and remix data on genetic diversity generated from different projects to address new biological questions in new ways. Here, we employ resequencing data from 1276 previously published maize samples and 239 newly resequenced maize samples to generate a single unified marker set of approximately 366 million segregating variants and approximately 46 million high‐confidence variants scored across crop wild relatives, landraces as well as tropical and temperate lines from different breeding eras. We demonstrate that the new variant set provides increased power to identify known causal flowering‐time genes using previously published trait data sets, as well as the potential to track changes in the frequency of functionally distinct alleles across the global distribution of modern maize. 

Abstract Quasi-periodic eruptions (QPEs) are luminous bursts of soft X-rays from the nuclei of galaxies, repeating on timescales of hours to weeks^1–5. The mechanism behind these rare systems is uncertain, but most theories involve accretion disks around supermassive black holes (SMBHs) undergoing instabilities^6–8or interacting with a stellar object in a close orbit^9–11. It has been suggested that this disk could be created when the SMBH disrupts a passing star^8,11, implying that many QPEs should be preceded by observable tidal disruption events (TDEs). Two known QPE sources show long-term decays in quiescent luminosity consistent with TDEs^4,12and two observed TDEs have exhibited X-ray flares consistent with individual eruptions^13,14. TDEs and QPEs also occur preferentially in similar galaxies¹⁵. However, no confirmed repeating QPEs have been associated with a spectroscopically confirmed TDE or an optical TDE observed at peak brightness. Here we report the detection of nine X-ray QPEs with a mean recurrence time of approximately 48 h from AT2019qiz, a nearby and extensively studied optically selected TDE¹⁶. We detect and model the X-ray, ultraviolet (UV) and optical emission from the accretion disk and show that an orbiting body colliding with this disk provides a plausible explanation for the QPEs. 

A core collapse supernova occurs when exothermic fusion ceases in the core of a massive star, which is typically caused by exhaustion of nuclear fuel. Theory predicts that fusion could be interrupted earlier by merging of the star with a compact binary companion. We report a luminous radio transient, VT J121001+495647, found in the Very Large Array Sky Survey. The radio emission is consistent with supernova ejecta colliding with a dense shell of material, potentially ejected by binary interaction in the centuries before explosion. We associate the supernova with an archival x-ray transient, which implies that a relativistic jet was launched during the explosion. The combination of an early relativistic jet and late-time dense interaction is consistent with expectations for a merger-driven explosion. 

ABSTRACT The Deep Synoptic Array 10-dish prototype (DSA-10) is an instrument designed to detect and localize fast radio bursts with arcsecond accuracy in real time. Deployed at Owens Valley Radio Observatory, it consists of ten 4.5-m diameter dishes, equipped with a 250-MHz bandwidth dual polarization receiver, centred at 1.4 GHz. The 20 input signals are digitized and field programmable gate arrays are used to transform the data to the frequency domain and transmit it over ethernet. A series of computer servers buffer both raw data samples and perform a real time search for fast radio bursts on the incoherent sum of all inputs. If a pulse is detected, the raw data surrounding the pulse are written to disc for coherent processing and imaging. The prototype system was operational from 2017 June to 2018 February conducting a drift scan search. Giant pulses from the Crab Pulsar were used to test the detection and imaging pipelines. The 10-dish prototype system was brought online again in 2019 March, and will gradually be replaced with the new DSA-110, a 110-dish system, over the next 2 yr to improve sensitivity and localization accuracy. 

Intense, millisecond-duration bursts of radio waves (named fast radio bursts) have been detected from beyond the Milky Way. Their dispersion measures—which are greater than would be expected if they had propagated only through the interstellar medium of the Milky Way—indicate extragalactic origins, and imply contributions from the intergalactic medium and perhaps from other galaxies. Although several theories exist regarding the sources of these fast radio bursts, their intensities, durations and temporal structures suggest coherent emission from highly magnetized plasma. Two of these bursts have been observed to repeat, and one repeater (FRB 121102) has been localized to the largest star-forming region of a dwarf galaxy at a cosmological redshift of 0.19. However, the host galaxies and distances of the hitherto non-repeating fast radio bursts are yet to be identified. Unlike repeating sources, these events must be observed with an interferometer that has sufficient spatial resolution for arcsecond localization at the time of discovery. Here we report the localization of a fast radio burst (FRB 190523) to a few-arcsecond region containing a single massive galaxy at a redshift of 0.66. This galaxy is different from the host of FRB 121102, as it is a thousand times more massive, with a specific star-formation rate (the star-formation rate divided by the mass) a hundred times smaller.