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Meeks, Kitty; Scheideler, Christian (Ed.)This work fully characterizes fractal generation in the seeded Tile Automata model (seeded TA), a model similar to the abstract Tile Assembly model (aTAM) with the added ability for adjacent tiles to change states. Under these assumptions, we first show that all discrete self-similar fractals (DSSFs) with feasible generators are strictly buildable at scale 1 and temperature 1 in seeded TA. We then show that these results imply the existence of a single seeded TA system Γ that can strictly build any DSSF infinitely at scale 1 and temperature 1.more » « less
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Bajaj, Divya; Knobel, Ryan; Perez, Juan Manuel; Reyes, Rene; Santos, Ramiro; Wylie, Tim (, Springer Nature Switzerland)
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Bajaj, Divya; Castellanos, Jose-Luis; Knobel, Ryan; Luchsinger, Austin; Massie, Aiden; Salinas, Adrian; Santos, Pablo; Santos, Ramiro; Schweller, Robert; Wylie, Tim (, Schloss Dagstuhl – Leibniz-Zentrum für Informatik)Chen, Ho-Lin; Hon, Wing-Kai; Tsai, Meng-Tsung (Ed.)The ability to detect whether a species (or dimension) is zero in Chemical Reaction Networks (CRN), Vector Addition Systems, or Petri Nets is known to increase the power of these models - making them capable of universal computation. While this ability may appear in many forms, such as extending the models to allow transitions to be inhibited, prioritized, or synchronized, we present an extension that directly performs this zero checking. We introduce a new void genesis CRN variant with a simple design that merely increments the count of a specific species when any other species' count goes to zero. As with previous extensions, we show that the model is Turing Universal. We then analyze several other studied CRN variants and show that they are all equivalent through a polynomial simulation with the void genesis model, which does not merely follow from Turing-universality. Thus, inhibitor species, reactions that occur at different rates, being allowed to run reactions in parallel, or even being allowed to continually add more volume to the CRN, does not add additional simulation power beyond simply detecting if a species count becomes zero.more » « less
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