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Male orangutans exhibit bimaturism—two mature morphs—flanged and unflanged males. Flanged males are larger, have cheek pads (flanges) and large throat sacs, and produce long calls. Previous orangutan paternity studies found variation between the reproductive success of each morph and in the degrees of reproductive skew. However, these studies were limited by a lack of behavioral maternity data, the inclusion of ex-captive orangutans, and/or the presence of feeding stations. Here we present the first paternity data from completely wild orangutans with known mothers. We hypothesized that (1) flanged males would have higher reproductive success than unflanged males due to flanged male dominance and female preference and (2) a single male would not monopolize paternity due to the temporal and spatial distribution of fecund females. We used fecal samples collected in Gunung Palung National Park from 2008-2019 to genotype orangutans (13 offspring born 2002-2015, their 10 mothers, and 19 candidate sires) using 12 microsatellites. MICROCHECKER 2.2.3 and CERVUS 3.0 were used to confirm the suitability of the microsatellite panel, fidelity of individual identities, and genetic maternity. Paternity analysis was performed with both CERVUS 3.0 and COLONY 2.0.6.7. We were able to identify paternity for six offspring. Four flanged males sired five offspring, and one sire’s morph was unknown at the time of conception. We found that flanged males have higher reproductive success and that females are not monopolizable in this completely wild setting. We discuss the implications of all published orangutan paternity results for understanding bimaturism in orangutans. 

The Gunung Palung Orangutan Project has conducted research on critically endangered wild Bornean orangutans (Pongo pygmaeus wurmbii) since 1994 in Gunung Palung National Park, West Kalimantan, Indonesia. A major goal of our broad-ranging research on orangutan behavior and ecology is to understand how the unique rainforest environment of Southeast Asia, characterized by dramatic changes in fruit productivity due to unpredictable mast fruiting, impacts orangutan behavior, physiology, and health. Much of our research has been devoted to the development of non-invasive techniques and an integrated biology approach – using hormonal assays, fecal processing, nutritional analysis, genetics, and behavioral ecology – and has led to an increased understanding of the ecological and evolutionary pressures shaping orangutan adaptations. Our results show that the extended life history and very slow reproductive rate of orangutans are adaptations to their environment. Orangutans in the Gunung Palung landscape, as elsewhere across Borneo and Sumatra, also face a series of conservation challenges, including extensive habitat loss and the illegal pet trade. We highlight how our investigations of orangutan health status, ecosystem requirements, and the assessment of orangutan density using ground and drone nest surveys have been applied to conservation efforts. We describe our project’s direct conservation interventions of public education and awareness campaigns, sustainable livelihood development, establishment of village-run customary forests, investigation of the illegal pet trade, and active engagement with Indonesian government organizations. These efforts, in concert with the development of local scientific and conservation capacity, provide a strong foundation for further conservation as orangutans face a challenging future.