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Abstract Iron (Fe) availability impacts marine primary productivity, potentially influencing the efficiency of the biological carbon pump. Stable Fe isotope analysis has emerged as a tool to understand how Fe is sourced and cycled in the water column; however its application to sediment records is complicated by overlapping isotope signatures of different sources and uncertainties in establishing chronologies. To overcome these challenges, we integrate Fe and osmium isotope measurements with multi‐element geochemical analysis and statistical modeling. We apply this approach to reconstruct the history of Fe delivery to the South Pacific from three pelagic clay sequences spanning 93 million years. Our analysis reveals five principal Fe sources—dust, distal background, two distinct hydrothermal inputs, and a magnesium‐rich volcanic ash. Initially, hydrothermal inputs dominated Fe deposition, but as the sites migrated away from their respective mid‐ocean ridges, other sources became prominent. Notably, from 66 to 40 million years ago (Ma), distal background Fe was the primary source before a shift to increasing dust dominance around 30 Ma. This transition implies that Fe in South Pacific seawater has been dust‐dominated since ≈30 Ma, despite extremely low dust deposition rates today. We speculate that the shift to episodic and low Fe fluxes in the South Pacific and Southern Ocean over the Cenozoic helped shape an ecological niche that favored phytoplankton that adapted to these conditions, such as diatoms. Our analysis highlights how Fe delivery to the ocean is driven by large‐scale tectonic and climatic shifts, while also influencing climate through its integral role in marine phytoplankton and Earth's biogeochemical cycles.