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Creators/Authors contains: "Stokes, Murray"

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  1. MacDonald, James H; Clary, Renee M; Archer, Reginald; Broadway, Ruby (Ed.)
    Participation in authentic scientific research has been shown to greatly benefit undergraduate students, both in terms of perception of science and knowledge of scientific concepts. We define authentic scientific research as projects in which results are unknown prior to performing experiments and are appropriate for presentation in peer-reviewed scientific journals and/or scientific conferences. Kindergarten through grade 12 (K–12) students have less frequent opportunities to participate in authentic research than university students, and the effects of research participation on such students are less well understood. From 2013 to the present, we organized two collaborations with different groups of K–12 students and teachers, each aimed at engaging K–12 students in authentic geoscience research, with a focus on K–12 students from excluded backgrounds who may have had restricted access to resources. First, the Malcolm X Shabazz Aquatic Geochemistry Team was an initiative to involve high school students at Malcolm X Shabazz High School in Newark, New Jersey, USA, in research focused on the activities of microbial communities inhabiting streams and rivers in New Jersey and eastern Pennsylvania. Second, the Integrating Continuous Experiential Activities for Geoscience Education (ICE-AGE) project is a Pathways into the Earth, Ocean, Polar and Atmospheric & Geospace Sciences (GEOPAths) project funded by the National Science Foundation that involves K–12 students in experiential learning through diverse means, including involving middle school students taking part in a summer program pseudonymously referred to as the Liberation Literacy Program (LLP) in geoscience research on a number of topics. Here, we report qualitative observations of the successes and challenges of these programs, as well as lessons learned, which may be useful for other researchers seeking to involve groups of K–12 students in authentic geoscience research education. 
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    Free, publicly-accessible full text available June 16, 2026
  2. Yin, Yanbin (Ed.)
    Microbial communities in terrestrial geothermal systems often contain chemolithoautotrophs with well-characterized distributions and metabolic capabilities. However, the extent to which organic matter produced by these chemolithoautotrophs supports heterotrophs remains largely unknown. Here we compared the abundance and activity of peptidases and carbohydrate active enzymes (CAZymes) that are predicted to be extracellular identified in metagenomic assemblies from 63 springs in the Central American and the Andean convergent margin (Argentinian backarc of the Central Volcanic Zone), as well as the plume-influenced spreading center in Iceland. All assemblies contain two orders of magnitude more peptidases than CAZymes, suggesting that the microorganisms more often use proteins for their carbon and/or nitrogen acquisition instead of complex sugars. The CAZy families in highest abundance are GH23 and CBM50, and the most abundant peptidase families are M23 and C26, all four of which degrade peptidoglycan found in bacterial cells. This implies that the heterotrophic community relies on autochthonous dead cell biomass, rather than allochthonous plant matter, for organic material. Enzymes involved in the degradation of cyanobacterial- and algal-derived compounds are in lower abundance at every site, with volcanic sites having more enzymes degrading cyanobacterial compounds and non-volcanic sites having more enzymes degrading algal compounds. Activity assays showed that many of these enzyme classes are active in these samples. High temperature sites (> 80°C) had similar extracellular carbon-degrading enzymes regardless of their province, suggesting a less well-developed population of secondary consumers at these sites, possibly connected with the limited extent of the subsurface biosphere in these high temperature sites. We conclude that in < 80°C springs, chemolithoautotrophic production supports heterotrophs capable of degrading a wide range of organic compounds that do not vary by geological province, even though the taxonomic and respiratory repertoire of chemolithoautotrophs and heterotrophs differ greatly across these regions. 
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  3. Yin, Yanbin (Ed.)
    Microbial communities in terrestrial geothermal systems often contain chemolithoautotrophs with well-characterized distributions and metabolic capabilities. However, the extent to which organic matter produced by these chemolithoautotrophs supports heterotrophs remains largely unknown. Here we compared the abundance and activity of peptidases and carbohydrate active enzymes (CAZymes) that are predicted to be extracellular identified in metagenomic assemblies from 63 springs in the Central American and the Andean convergent margin (Argentinian backarc of the Central Volcanic Zone), as well as the plume-influenced spreading center in Iceland. All assemblies contain two orders of magnitude more peptidases than CAZymes, suggesting that the microorganisms more often use proteins for their carbon and/or nitrogen acquisition instead of complex sugars. The CAZy families in highest abundance are GH23 and CBM50, and the most abundant peptidase families are M23 and C26, all four of which degrade peptidoglycan found in bacterial cells. This implies that the heterotrophic community relies on autochthonous dead cell biomass, rather than allochthonous plant matter, for organic material. Enzymes involved in the degradation of cyanobacterial- and algal-derived compounds are in lower abundance at every site, with volcanic sites having more enzymes degrading cyanobacterial compounds and non-volcanic sites having more enzymes degrading algal compounds. Activity assays showed that many of these enzyme classes are active in these samples. High temperature sites (> 80°C) had similar extracellular carbon-degrading enzymes regardless of their province, suggesting a less well-developed population of secondary consumers at these sites, possibly connected with the limited extent of the subsurface biosphere in these high temperature sites. We conclude that in < 80°C springs, chemolithoautotrophic production supports heterotrophs capable of degrading a wide range of organic compounds that do not vary by geological province, even though the taxonomic and respiratory repertoire of chemolithoautotrophs and heterotrophs differ greatly across these regions. 
    more » « less