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While the centrality of posttranscriptional modifications to RNA biology has long been acknowledged, the function of the vast majority of modified sites remains to be discovered. Illustrative of this, there is not yet a discrete biological role assigned for one of the most highly conserved modifications, 5-methyluridine at position 54 in tRNAs (m⁵U54). Here, we uncover contributions of m⁵U54 to both tRNA maturation and protein synthesis. Our mass spectrometry analyses demonstrate that cells lacking the enzyme that installs m⁵U in the T-loop (TrmA inEscherichia coli, Trm2 inSaccharomyces cerevisiae) exhibit altered tRNA modification patterns. Furthermore, m⁵U54-deficient tRNAs are desensitized to small molecules that prevent translocation in vitro. This finding is consistent with our observations that relative to wild-type cells,trm2Δcell growth and transcriptome-wide gene expression are less perturbed by translocation inhibitors. Together our data suggest a model in which m⁵U54 acts as an important modulator of tRNA maturation and translocation of the ribosome during protein synthesis.

Flow pulses mobilize particulate organic matter (POM) in streams from the surrounding landscape and streambed. This POM serves as a source of energy and nutrients, as well as a means for organismal dispersal, to downstream communities. In the barren terrestrial landscape of the McMurdo Dry Valleys (MDV) of Antarctica, benthic microbial mats occupying different in-stream habitat types are the dominant POM source in the many glacier-fed streams. Many of these streams experience daily flow peaks that mobilize POM, and diatoms recovered from underlying stream sediments suggest that mat-derived diatoms in the POM are retained there through hyporheic exchange. Yet, ‘how much’ and ‘when’ different in-stream habitat types contribute to POM diatom assemblages is unknown. To quantify the contribution of different in-stream habitat types to POM diatom assemblages, we collected time-integrated POM samples over four diel experiments, which spanned a gradient of flow conditions over three summers. Diatoms from POM samples were identified, quantified, and compared with dominant habitat types (i.e., benthic ‘orange’ mats, marginal ‘black’ mats, and bare sediments). Like bulk POM, diatom cell concentrations followed a clockwise hysteresis pattern with stream discharge over the daily flow cycles, indicating supply limitation. Diatom community analyses showed that different habitat types harbor distinct diatom communities, and mixing models revealed that a substantial proportion of POM diatoms originated from bare sediments during baseflow conditions. Meanwhile, orange and black mats contribute diatoms to POM primarily during daily flow peaks when both cell concentrations and discharge are highest, making mats the most important contributors to POM diatom assemblages at high flows. These observations may help explain the presence of mat-derived diatoms in hyporheic sediments. Our results thus indicate a varying importance of different in-stream habitats to POM generation and export on daily to seasonal timescales, with implications for biogeochemical cycling and the local diatom metacommunity.

Several MOFs are evaluated as adsorbents of anthropogenic N₂O emissions, the third most abundant greenhouse gas, through complimentary experimental and DFT analysis. N₂O activation in M₂(dobdc) MOFs is also studied.

Recent experimental results have demonstrated that zwitterionic ionogel comprised of polyzwitterion (polyZI)-supported lithium salt-doped ionic liquid exhibits improved conductivities and lithium transference numbers than the salt-doped base ionic liquid electrolyte (ILE). However, the underlying mechanisms of such observations remain unresolved. In this work, we pursued a systematic investigation to understand the impact of the polyZI content and salt concentration on the structural and dynamic properties of the poly(MPC) ionogel of our model polyZI ionogel, poly(2-methacryloyloxyethyl phosphorylcholine) [poly(MPC)] supported LiTFSI/N-butyl-N-methylpyrrolidinium TFSI base ionic liquid electrolyte. Our structural analyses show strong lithium–ZI interaction consistent with the physical network characteristic observed in the experiments. An increase in polyZI content leads to an increased fraction of Li+ ions coordinated with the polyZI. In contrast, an increase in salt concentration leads to a decreased fraction of Li+ ions coordinated with the polyZI. The diffusivities of the mobile ions in the poly(MPC) ionogel were found to be lower than the base ILE in agreement with experiments at T > 300 K. Analysis of ion transport mechanisms shows that lithium ions within the poly(MPC) ionogel travel via a combination of structural, vehicular diffusion, as well as hopping mechanism. Finally, the conductivity trend crossover between the poly(MPC) ionogel and the base ILE was rationalized via a temperature study that showed that the base ILE ions are influenced more by the variation of temperature when compared to the poly(MPC) ions.

Abstract. Deposition of sulfuric acid in ice cores is important both for understanding past volcanic activity and for synchronizing ice core timescales. Sulfuric acid has a low eutectic point, so it can potentially exist in liquid at grain boundaries and veins, accelerating chemical diffusion. A high effective diffusivity would allow post-depositional diffusion to obscure the climate history and the peak matching among older portions of ice cores. Here, we use records of sulfate from the European Project of Ice Coring in Antarctica (EPICA) Dome C (EDC) ice core to estimate the effective diffusivity of sulfuric acid in ice. We focus on EDC because multiple glacial–interglacial cycles are preserved, allowing analysis for long timescales and deposition in similar climates. We calculate the mean concentration gradient and the width of prominent volcanic events, and analyze the evolution of each with depth and age. We find the effective diffusivities for interglacial and glacial maximums to be 5±3×10-9 m2 a−1, an order of magnitude lower than a previous estimate derived from the Holocene portion of EDC (Barnes et al., 2003). The effective diffusivity may be even smaller if the bias from artificial smoothing from the sampling is accounted for. Effective diffusivity is not obviously affected by the ice temperature until about −10 ∘C, 3000 m depth, which is also where anomalous sulfate peaks begin to be observed (Traversi et al., 2009). Low effective diffusivity suggests that sulfuric acid is not readily diffusing in liquid-like veins in the upper portions of the Antarctic Ice Sheet and that records may be preserved in deep, old ice if the ice temperature remains well below the pressure melting point.

Cyanobacteria in polar environments face environmental challenges, including cold temperatures and extreme light seasonality with small diurnal variation, which has implications for polar circadian clocks. However, polar cyanobacteria remain underrepresented in available genomic data, and there are limited opportunities to study their genetic adaptations to these challenges. This paper presents four new Antarctic cyanobacteria metagenome-assembled genomes (MAGs) from microbial mats in Lake Vanda in the McMurdo Dry Valleys in Antarctica. The four MAGs were classified asLeptolyngbyasp. BulkMat.35,Pseudanabaenaceae cyanobacteriumMP8IB2.15,Microcoleussp. MP8IB2.171, andLeptolyngbyaceae cyanobacteriumMP9P1.79. The MAGs contain 2.76 Mbp – 6.07 Mbp, and the bin completion ranges from 74.2–92.57%. Furthermore, the four cyanobacteria MAGs have average nucleotide identities (ANIs) under 90% with each other and under 77% with six existing polar cyanobacteria MAGs and genomes. This suggests that they are novel cyanobacteria and demonstrates that polar cyanobacteria genomes are underrepresented in reference databases and there is continued need for genome sequencing of polar cyanobacteria. Analyses of the four novel and six existing polar cyanobacteria MAGs and genomes demonstrate they have genes coding for various cold tolerance mechanisms and most standard circadian rhythm genes with theLeptolyngbyasp. BulkMat.35 andLeptolyngbyaceae cyanobacteriumMP9P1.79 containedkaiB3, a divergent homolog ofkaiB.