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ABSTRACT Using a set of high resolution simulations, we quantify the effect of species-specific initial transfer functions on probes of the intergalactic medium (IGM) via the Lyman-α forest. We focus on redshifts 2–6, after H i reionization. We explore the effect of these initial conditions on measures of the thermal state of the low density IGM: the curvature, Doppler width cutoff, and Doppler width distribution. We also examine the matter and flux power spectrum, and potential consequences for constraints on warm dark matter models. We find that the curvature statistic is at most affected at the $\approx 2{{\ \rm per\ cent}}$more »
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ABSTRACT The reionization of the second electron of helium shapes the physical state of intergalactic gas at redshifts between 2 ≲ z ≲ 5. Because performing full in situ radiative transfer in hydrodynamic simulations is computationally expensive for large volumes, the physics of He ii reionization is often approximated by a uniform ultraviolet background model that does not capture the spatial inhomogeneity of reionization. We have devised a model that implements the effects of He ii reionization using semi-analytic calculations of the thermal state of intergalactic gas – a way to bypass a full radiative transfer simulation while still realizing the physics of He ii reionizationmore »