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Joint variational autoencoders for multimodal imputation and embedding

https://doi.org/10.1038/s42256-023-00663-z

Cohen Kalafut, Noah; Huang, Xiang; Wang, Daifeng (June 2023, Nature Machine Intelligence)

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BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids

https://doi.org/10.1016/j.crmeth.2023.100409

He, Chenfeng; Kalafut, Noah Cohen; Sandoval, Soraya O.; Risgaard, Ryan; Sirois, Carissa L.; Yang, Chen; Khullar, Saniya; Suzuki, Marin; Huang, Xiang; Chang, Qiang; et al (February 2023, Cell Reports Methods)

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Comparing Technological Development and Biological Evolution from a Network Perspective

https://doi.org/10.1016/j.cels.2020.02.004

Yan, Koon-Kiu; Wang, Daifeng; Xiong, Kun; Gerstein, Mark (March 2020, Cell Systems)

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KBase: The United States Department of Energy Systems Biology Knowledgebase

https://doi.org/10.1038/nbt.4163

Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; et al (July 2018, Nature Biotechnology)

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