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SUMMARY Although vacuolar phosphate transporters (VPTs) are essential for plant phosphorus adaptation, their role inRhizobium–legume symbiosis is unclear. In this study, homologous genes ofVPT1(MtVPTs)were identified inMedicago truncatulato assess their roles inRhizobium–legume symbiosis and phosphorus adaptation.MtVPT2andMtVPT3mainly positively responded to low and high phosphate, respectively. However, bothmtvpt2andmtvpt3mutants displayed shoot phenotypes with high phosphate sensitivity and low phosphate tolerance. The root‐to‐shoot phosphate transfer efficiency was significantly enhanced inmtvpt3but weakened inmtvpt2, accompanied by lower and higher root cytosolic inorganic phosphate (Pi) concentration, respectively. Low phosphate inducedMtVPT2andMtVPT3expressions in nodules.MtVPT2andMtVPT3mutations markedly reduced the nodule number and nitrogenase activity under different phosphate conditions. Cytosolic Pi concentration in nodules was significantly lower inmtvpt2andmtvpt3than in the wildtype, especially in tissues near the base of nodules, probably due to inhibition of long‐distance Pi transport and cytosolic Pi supply. Also,mtvpt2andmtvpt3could not maintain a stable cytosolic Pi level in the nodule fixation zone as the wildtype under low phosphate stress. These findings show thatMtVPT2and MtVPT3modulate phosphorus adaptation and rhizobia–legume symbiosis, possibly by regulating long‐distance Pi transport.