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The Fine‐Gray proportional sub‐distribution hazards (PSH) model is among the most popular regression model for competing risks time‐to‐event data. This article develops a fast safe feature elimination method, named PSH‐SAFE, for fitting the penalized Fine‐Gray PSH model with a Lasso (or adaptive Lasso) penalty. Our PSH‐SAFE procedure is straightforward to implement, fast, and scales well to ultrahigh dimensional data. We also show that as a feature screening procedure, PSH‐SAFE is safe in a sense that the eliminated features are guaranteed to be inactive features in the original Lasso (or adaptive Lasso) estimator for the penalized PSH model. We evaluate the performance of the PSH‐SAFE procedure in terms of computational efficiency, screening efficiency and safety, run‐time, and prediction accuracy on multiple simulated datasets and a real bladder cancer data. Our empirical results show that the PSH‐SAFE procedure possesses desirable screening efficiency and safety properties and can offer substantially improved computational efficiency as well as similar or better prediction performance in comparison to their baseline competitors.more » « less
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Zhang, Zhuan; Jamieson, Cooper S.; Zhao, Yi-Lei; Li, Dehai; Ohashi, Masao; Houk, K. N.; Tang, Yi (, Journal of the American Chemical Society)
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Zhang, Zhuan; Qiao, Tianzhang; Watanabe, Kenji; Tang, Yi (, Angewandte Chemie International Edition)Abstract Phenylfuropyridone natural products from fungi exhibit a range of antibacterial and cytotoxicity activities, and can potentiate azole antifungal compounds. We elucidated the biosynthetic pathway of compounds in the citridone family through heterologous reconstitution of thepfppathway. We demonstrate that multiple members of this family can be accessed from a reactiveortho‐quinone methide (o‐QM) intermediate through electrocyclization, cycloisomerization, or conjugate addition. Formation of the quaternary carbon center in citridone B is catalyzed by an epoxide‐forming P450 enzyme, followed by carbon skeletal rearrangement. Our results showcase how nature harvests the reactivities of ano‐QM intermediate to biosynthesize complex natural products.more » « less
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